Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M03
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)                       29   0.87 
SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)                   28   2.0  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   27   4.7  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_59310| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)               26   8.1  

>SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)
          Length = 320

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 80  DIHGAAIDAHVEASDHVRAXADAXREQHDQAAEIHGXAVNAAVDHSWQAV 229
           D+ G+ +DA     DH    A+A  E+ ++  +    ++N ++D SW  +
Sbjct: 161 DLTGSHLDATGCGEDHAALIAEASAEEPEKEIK-RENSINGSIDSSWSKI 209


>SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 59  APTISAGDIHGAAIDAHVEA--SDHVRAXADAXREQHDQAAEIH 184
           APTI+ G IH   I   VE   S H     D    ++DQ+A ++
Sbjct: 433 APTINGGQIHPDPITTTVELDNSSHFYMNGDQMHHEYDQSAYVN 476


>SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)
          Length = 404

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 365 DNGSGXIRSVGDHGGGYVTNQLLGENGNG 279
           D G G  + +G++G G   N+ +GE G G
Sbjct: 50  DTGLGGNKGIGEYGTGLAGNKGIGEYGTG 78



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 359 GSGXIRSVGDHGGGYVTNQLLGENGNG 279
           G G  + +G+HG G   N+ +GE G G
Sbjct: 201 GMGGNKGIGEHGTGLGGNKGIGEYGTG 227



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 359 GSGXIRSVGDHGGGYVTNQLLGENGNG 279
           G G  + +G+HG G   N+ +GE G G
Sbjct: 227 GLGGNKGIGEHGTGLGGNKGIGEYGTG 253



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 359 GSGXIRSVGDHGGGYVTNQLLGENGNG 279
           G G  + +G+HG G   N+  GE G G
Sbjct: 344 GLGGNKGIGEHGTGLAGNKGKGEYGTG 370


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 363 QRERXHTQRGRPRGRVRDQPVAWRER 286
           ++ER  TQ+ +P+G+   +P A +E+
Sbjct: 832 RKERRETQKSQPKGKTNSRPPANKEK 857


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 268 RRSEPFPFSPSNWLVTYPPPWSPTLR 345
           +R++ FP +  +W     PP SP+LR
Sbjct: 57  QRTKKFPMTAGSWTSNDGPPGSPSLR 82


>SB_59310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 365 DNGSGXIRSVGDHGGGYVTNQLLGENGNGSD 273
           D+G+G     G++GGG      +G +GNG +
Sbjct: 336 DDGNGFEIDGGNNGGGTEDGDCVGYDGNGCE 366


>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
          Length = 690

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 286 PFSPSNWLVTYPPPWSPTLRMXPLPL 363
           PFS S W  T P P    +R   LPL
Sbjct: 107 PFSRSKWHQTNPSPAQSDIRQTLLPL 132



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 286 PFSPSNWLVTYPPPWSPTLRMXPLPL 363
           PFS S W  T P P    +R   LPL
Sbjct: 362 PFSRSKWHQTNPSPAQSDIRQTLLPL 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,917,261
Number of Sequences: 59808
Number of extensions: 89535
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)