Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M03
         (365 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear prote...    29   4.6  
BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.    29   4.6  
AK122593-1|BAC56934.1|  229|Homo sapiens FLJ00419 protein protein.     29   4.6  
BC039704-1|AAH39704.1|  217|Homo sapiens MLXIP protein protein.        28   8.0  

>BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear protein
           NHN1 protein.
          Length = 953

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 363 QRERXHTQRGRPRGRVRDQPVAWRERERLR 274
           +RER + QR R R R RD+    R+RER R
Sbjct: 407 ERERENRQRERERERERDRERERRQRERER 436


>BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.
          Length = 718

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 363 QRERXHTQRGRPRGRVRDQPVAWRERERLR 274
           +RER + QR R R R RD+    R+RER R
Sbjct: 172 ERERENRQRERERERERDRERERRQRERER 201


>AK122593-1|BAC56934.1|  229|Homo sapiens FLJ00419 protein protein.
          Length = 229

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 363 QRERXHTQRGRPRGRVRDQPVAWRERERLR 274
           +RER + QR R R R RD+    R+RER R
Sbjct: 80  ERERENRQRERERERERDRERERRQRERER 109


>BC039704-1|AAH39704.1|  217|Homo sapiens MLXIP protein protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 277 EPFPFSPSNWLVTYPPPWSPTLRMXPLP 360
           +P  F PS   ++ PPP SP L + P P
Sbjct: 18  QPTDFGPSEPPLSVPPPISPVLPLVPPP 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,765,289
Number of Sequences: 237096
Number of extensions: 444687
Number of successful extensions: 2072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)