Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M03
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    27   4.1  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    27   4.1  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    27   4.1  
AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    27   4.1  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z83219-7|CAB05698.2|  473|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z80217-10|CAB02296.2|  473|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical p...    26   9.5  
U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective fasci...    26   9.5  
AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormo...    26   9.5  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   EPTXSQPTASQPTVLAPAAPTISA 76
           EPT    TA++PT  AP  PT  A
Sbjct: 159 EPTVKNTTAAEPTTEAPPPPTTKA 182


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 362 NGSGXIRSVG-DHGGGYVTNQLLGENGNGSDRRH 264
           NGS   RS G  +GG  +++     NGNG++ RH
Sbjct: 351 NGSCRTRSNGYANGGSVISHYHPTSNGNGNNNRH 384


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 362 NGSGXIRSVG-DHGGGYVTNQLLGENGNGSDRRH 264
           NGS   RS G  +GG  +++     NGNG++ RH
Sbjct: 351 NGSCRTRSNGYANGGSVISHYHPTSNGNGNNNRH 384


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 362 NGSGXIRSVG-DHGGGYVTNQLLGENGNGSDRRH 264
           NGS   RS G  +GG  +++     NGNG++ RH
Sbjct: 351 NGSCRTRSNGYANGGSVISHYHPTSNGNGNNNRH 384


>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 11  TXSQPTASQPTVLAPAAPTISAGDIHGAAIDAHVEASDHVRAXADAXREQHDQAAEI 181
           T + P ASQPT  AP      AG I    ++A +E  +  R   D  R++ +   ++
Sbjct: 131 TVAAPAASQPTATAPPPDNFDAGRI--LRLEAELERVN--RELEDTKRKKREDEEDL 183


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 362 NGSGXIRSVG-DHGGGYVTNQLLGENGNGSDRRH 264
           NGS   RS G  +GG  +++     NGNG++ RH
Sbjct: 351 NGSCRTRSNGYANGGSVISHYHPTSNGNGNNNRH 384


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 185 GXAVNAAVDHSWQAVXAVKTVEAKL 259
           G  V AAVDH+ Q+  A+ T+E ++
Sbjct: 515 GTFVPAAVDHAVQSTDAITTIECRI 539


>Z83219-7|CAB05698.2|  473|Caenorhabditis elegans Hypothetical
           protein C31C9.1a protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   PTXSQPTASQPTVLAPAAPTIS 73
           PT +  T   P+  APAAPT++
Sbjct: 423 PTVTTTTPGTPSTAAPAAPTVT 444


>Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical
           protein K09B11.5b protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   SEPTXSQPTASQPTVLAPAAP 64
           S+P  SQP  SQP V  P  P
Sbjct: 488 SQPPVSQPPVSQPPVSQPPVP 508


>Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical
           protein K09B11.5a protein.
          Length = 589

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   SEPTXSQPTASQPTVLAPAAP 64
           S+P  SQP  SQP V  P  P
Sbjct: 552 SQPPVSQPPVSQPPVSQPPVP 572


>Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical
           protein R03C1.1 protein.
          Length = 321

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 8   PTXSQPTASQPTVLAPAAPTISA 76
           PT   PT   PT  AP  PT S+
Sbjct: 221 PTTQVPTTQAPTTQAPTMPTSSS 243


>Z80217-10|CAB02296.2|  473|Caenorhabditis elegans Hypothetical
           protein C31C9.1a protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   PTXSQPTASQPTVLAPAAPTIS 73
           PT +  T   P+  APAAPT++
Sbjct: 423 PTVTTTTPGTPSTAAPAAPTVT 444


>Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 32  SQPTVLAPAAPTISAGDIHGAAIDAHVEASDHVRAXADAXREQHDQ 169
           SQP    P  P  +A + H  ++DA  +     RA      +Q DQ
Sbjct: 58  SQPDGENPKRPERAADNSHKGSLDADTDIKRPARAAGQKETQQADQ 103


>Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 32  SQPTVLAPAAPTISAGDIHGAAIDAHVEASDHVRAXADAXREQHDQ 169
           SQP    P  P  +A + H  ++DA  +     RA      +Q DQ
Sbjct: 58  SQPDGENPKRPERAADNSHKGSLDADTDIKRPARAAGQKETQQADQ 103


>U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective
           fasciculation of axonsprotein 1 protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   SEPTXSQPTASQPTVLAPAAPTISAGDIHG 91
           S  T S PTAS PT+       +S+G  +G
Sbjct: 86  SVKTDSPPTASSPTLCCAVCGDVSSGKHYG 115


>AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormone
           receptor FAX-1 protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   SEPTXSQPTASQPTVLAPAAPTISAGDIHG 91
           S  T S PTAS PT+       +S+G  +G
Sbjct: 86  SVKTDSPPTASSPTLCCAVCGDVSSGKHYG 115


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   EPTXSQPTASQPTVLAPAAPT 67
           EP+ SQP++S P   AP +P+
Sbjct: 589 EPSPSQPSSSGPIQTAPPSPS 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,174,290
Number of Sequences: 27780
Number of extensions: 59860
Number of successful extensions: 403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)