Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M01
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   0.80 
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    27   0.80 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   3.2  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    24   5.6  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   7.5  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    24   7.5  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    23   9.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 93  PKNEDASEEAKKIVDDAKNF 152
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 195 KQLILGTASGWITGFISMKIGKXXXXXXXXXXXXXHIASHKGYIDINW 338
           +Q+ +G++ G   GF   K+G+                + KG I INW
Sbjct: 41  RQIFIGSSLGLAAGFALGKLGRLFIVACSAVFATIAYINSKGLIRINW 88


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 87  AKPKNEDASEEAKKIVDD-AKNFIERAIAD 173
           +KP NED  E+ K I +D +K   E++ +D
Sbjct: 227 SKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 224 MDNWFYIYEDWKSSSCWTWRWSHXFTH 304
           +  WF+ Y D KSS+  T   SH F H
Sbjct: 365 VSQWFF-YRDTKSSATKTNLVSHFFYH 390


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +3

Query: 90  KPKNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLILGTASGWI 230
           K K E   +EAK +   A NF+           +   L LG  S ++
Sbjct: 83  KGKTEKLEKEAKSVYSKACNFVNAHKVPASAAISINLLSLGAISAYL 129


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   GRPMIDQIGIVLISVSISYKILKLEISNG 88
           G  M+  +GI   SVS++ K+L     NG
Sbjct: 134 GTGMLSVLGISFTSVSVAPKVLSQMYENG 162


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 223 PDAVPKISCLVAEVLPISAMALSIK 149
           PD  P  SC+  + +P+S   + I+
Sbjct: 131 PDPKPARSCVAVKTVPLSTQGVKIE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,802
Number of Sequences: 5004
Number of extensions: 16774
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)