Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M01
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0521 - 14959318-14959677                                         26   6.7  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           26   8.9  

>05_03_0521 - 14959318-14959677
          Length = 119

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 239 YIYEDWKSSSCWTWRWSHXFTHCKPQRL 322
           Y   +W  + C+ WRW   +++    RL
Sbjct: 30  YWTTNWTGNGCFAWRWPILYSYVGHSRL 57


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 96  KNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLILGTASGWI 230
           ++E + +E K++ +D    +   + D    S+TK+ I+G  SGW+
Sbjct: 113 ESEASQDEEKEMPEDPFEVVSIFMDDF---SSTKRNIIGHVSGWL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,349,326
Number of Sequences: 37544
Number of extensions: 92711
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)