Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M01
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-06
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   1.7  
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   3.0  
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)                  27   4.0  
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)                26   7.0  
SB_9862| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  

>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
 Frame = +3

Query: 84  MAKPKN--EDASEEAKKIVDDA----KNFIERAIA-DIGKTSATKQLILGTASGWITGFI 242
           M+ P++  ED+ EE  +I++      ++ +   ++ D+G  +  +Q+ +G A+GW  G++
Sbjct: 1   MSDPESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGATGWFAGYM 60

Query: 243 SMKIGKXXXXXXXXXXXXXHIASHKGYIDINW 338
             KIGK              IA   GYI+INW
Sbjct: 61  CKKIGKLTISAIGGGILILQIAHKTGYININW 92


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 90  KPKNEDASEEAKKIVDDAKNFIERAIADIGKTSA 191
           KPK +D+  E  KI+  +   IE  I D+  T++
Sbjct: 244 KPKGDDSEVEKAKIIQTSARLIESEIKDLPTTTS 277


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 236 FYIYEDWKSSSCWTWRWSHXFTHCK 310
           F+    + S S WTW WS   T C+
Sbjct: 2   FWFPSSFNSWSPWTWNWSFVGTACR 26


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  AKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSAT 194
           ++P+ EDA + +  +++DA       I D  K SAT
Sbjct: 303 SRPREEDAVKHSATVIEDAVKHSSTVIEDAVKHSAT 338


>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
          Length = 472

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 227 DNWFYIYEDWKSSSC 271
           D+W Y+YE W  S C
Sbjct: 63  DDWQYVYESWFPSKC 77


>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
          Length = 803

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  N*KLVMAKPKNEDASEEAKKIVDDAKNFIERAIADIGK 182
           N K   AKP  + A E+ KK  D AKN  E+  ++I K
Sbjct: 750 NKKAEKAKPPQKAAQEKNKKQSDAAKNKKEQEESEIHK 787


>SB_9862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 90  KPKNEDASEEAKKIVDDAKNFIER--AIADIGKTSATKQLI 206
           KP+  + S E K I  DA+N+++R     D+   S+ K+ I
Sbjct: 17  KPERREGSSEEKIIDLDARNWVKRLYEATDVWPKSSCKEAI 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,542,459
Number of Sequences: 59808
Number of extensions: 109123
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)