Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M01
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-5|CAA88970.1|  138|Caenorhabditis elegans Hypothetical pr...    43   7e-05
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    26   6.1  
AF078780-1|AAC26911.1|  354|Caenorhabditis elegans Serpentine re...    26   6.1  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    26   6.1  
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    26   6.1  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    26   6.1  

>Z49130-5|CAA88970.1|  138|Caenorhabditis elegans Hypothetical
           protein T06D8.7 protein.
          Length = 138

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 36/80 (45%)
 Frame = +3

Query: 96  KNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLILGTASGWITGFISMKIGKXXXXX 275
           KN+  S +A K V DA + +   + D+ K     QL +G   G +TG+   K G+     
Sbjct: 6   KNDGGSGKAGKGVSDAIDTVLYYVVDLKKQQPMVQLGVGAGFGTVTGYFVTKGGRLVAAT 65

Query: 276 XXXXXXXXHIASHKGYIDIN 335
                     A HKGYI +N
Sbjct: 66  VGISFLLAQFAIHKGYITLN 85


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 221 RMDNWFYIYEDWKSSSCWTWRWS 289
           RM+ W  +Y D    S WT  W+
Sbjct: 812 RMNGWLRVYRDDLPESTWTSLWA 834


>Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical
           protein D2030.1 protein.
          Length = 540

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +2

Query: 224 MDNWFYIYEDWKSSSCWTWRWSH 292
           ++ WFY++   K      W W H
Sbjct: 447 VETWFYLWRATKDEKYRQWAWDH 469


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 87  AKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLIL 209
           AKPK + A   AK+    AKN  E+ +A I K    K+ +L
Sbjct: 446 AKPKLDGAPIRAKRPPITAKNIWEQRMAKIEKKEEKKKPLL 486


>AF078780-1|AAC26911.1|  354|Caenorhabditis elegans Serpentine
           receptor, class h protein79 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 166 MALSIKFLASSTIFLASSEASSFLGLAITNF 74
           +++ I FL  S +FL  S  S +   A+TNF
Sbjct: 265 VSIPILFLLPSFVFLVFSVVSGYYNQALTNF 295


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 87  AKPKNEDASEEAKKIVDDAKNFIER 161
           A+PK E+ SEE +K+ +D    ++R
Sbjct: 26  AEPKKEEMSEEDQKLEEDLNLLVQR 50


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 223 PDAVPKISCLVAEVLPISAMALSIKFLASSTIFLASSEAS 104
           PDAV  I+  V   LPI  M   +  L+ S++ + ++EA+
Sbjct: 100 PDAVFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEAT 139


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 223 PDAVPKISCLVAEVLPISAMALSIKFLASSTIFLASSEAS 104
           PDAV  I+  V   LPI  M   +  L+ S++ + ++EA+
Sbjct: 107 PDAVFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEAT 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,747,538
Number of Sequences: 27780
Number of extensions: 90481
Number of successful extensions: 283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)