Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L23
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901...    30   1.9  
04_04_0874 - 28988687-28989736                                         29   3.3  
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868...    28   5.7  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    28   7.6  
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802...    28   7.6  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    28   7.6  

>01_06_1759 +
           39689410-39689573,39689728-39689923,39690014-39690103,
           39690221-39690277,39690391-39690460,39690747-39690811,
           39691408-39691462,39691704-39691831,39691919-39691950,
           39692205-39692274,39692723-39692824,39692921-39693010,
           39693084-39693232,39693620-39693731,39695332-39695412,
           39695481-39695705,39695815-39695937,39696021-39696137
          Length = 641

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 281 ENRWCLPLGDRRLTKPLCQQNAPHPNVSPPDSMSRFAIKKNTIHSLRT 138
           EN +   LG   L  P   + AP P     D  S+F  KK   H  R+
Sbjct: 488 ENSFLRALGHIELDLPEAPEKAPKPPAQAVDPFSKFGPKKEISHIFRS 535


>04_04_0874 - 28988687-28989736
          Length = 349

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 604 HLDQPRQPDPWAGVLVHHVRALPTPSP-LFQALD-PVGLQFSGIGTQSPGTVCPGTND 437
           +L  P    P A  +VH  R +PTPSP L  +LD P+ +     GT +   + P   D
Sbjct: 283 YLVDPAATQPPAPEIVH-TRLIPTPSPQLGSSLDTPIQVDSETEGTNTESEIKPDITD 339


>02_05_0209 -
           26786399-26786449,26786533-26786625,26786721-26786861,
           26786973-26787050,26787146-26787247,26787595-26787693,
           26787804-26787875,26787964-26788104,26788222-26788503
          Length = 352

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 277 FSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNI-FGEELEKALKDKFRGHWYPD 453
           +S    ++ + ++ IE +V +N ++  + +  PRRR+N+ FGE+     +D     W   
Sbjct: 38  YSSSGMNVGVSRLKIE-EVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAK 96

Query: 454 RPCRGSAFR 480
            P   ++F+
Sbjct: 97  CPSALASFK 105


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 631 PFLRYGMILHLDQPRQPDPWAGV 563
           P  RY + L   QPR+P  W G+
Sbjct: 231 PVYRYKICLRFTQPREPAHWEGI 253


>06_02_0276 +
           13678457-13678734,13679592-13679931,13680025-13680243,
           13680328-13680420
          Length = 309

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 196 GLTFGWGAFC*HSGLVNRRSPSGKHHRFSPYDCSLVLPKMH 318
           G  FGW A C   G++     SG   +++ +  +++ P  H
Sbjct: 260 GWRFGWIAICDPKGILKETKLSGFVPKYNDFSTNILFPTNH 300


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 514 LERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRI 621
           L+R A E+ + +RD++E +P  +A W D G   + I
Sbjct: 62  LQRIANET-IELRDLVEIVPEPIAKWQDVGPDHFNI 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,773
Number of Sequences: 37544
Number of extensions: 448068
Number of successful extensions: 1274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)