Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L23
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_16439| Best HMM Match : BTG (HMM E-Value=0)                         93   2e-19
SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30)                   85   5e-17
SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)                       29   4.4  
SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.7  

>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score =  150 bits (363), Expect = 1e-36
 Identities = 63/116 (54%), Positives = 89/116 (76%)
 Frame = +1

Query: 313  MHIEVQVALNFVISYLYNKLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCLKT 492
            M +E+QV++NF++++LYNKLPRRRV++FGEEL   L  KF GHWYP++P +GS +RC+  
Sbjct: 660  MELEIQVSVNFLMNFLYNKLPRRRVDLFGEELAMKLTKKFDGHWYPNKPTKGSGYRCILI 719

Query: 493  GGPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAVKVLFSXD 660
               LDP+L  AARESG+ + DV  +LP  L +W+DP EVSYRIGE+G+V V++  +
Sbjct: 720  THYLDPILAAAARESGLKIDDVKANLPEKLCLWIDPHEVSYRIGEQGSVNVIYKKE 775


>SB_16439| Best HMM Match : BTG (HMM E-Value=0)
          Length = 158

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
 Frame = +1

Query: 313 MHIEVQVALNFVISYLYN--KLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCL 486
           M  EV+ A +F+ + L    K+  RRV  F  ++E+ L +++R HW+P  P  GS FRC+
Sbjct: 1   MKTEVRTACSFLATILRRSTKVNDRRVEDFSTKMEELLCERYRHHWHPQNPLLGSGFRCI 60

Query: 487 KTGGPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAV 639
           +    +DP++  AAR +G    + L+  P +L +WVDP EV +RIGE G++
Sbjct: 61  RINHTMDPIVAAAARAAGFSY-EQLKSFPEELTLWVDPNEVCFRIGENGSI 110


>SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30)
          Length = 184

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
 Frame = +1

Query: 313 MHIEVQVALNFVISYLYN-KLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCLK 489
           M  EV  A+NFV+S L N  L   +V  F E LE+ + ++F+ HW+P++P +G+A+RCL 
Sbjct: 1   MKNEVSSAVNFVVSNLTNTSLSSEQVGQFKENLEQLITERFQDHWHPNKPLKGNAYRCLN 60

Query: 490 TG-GPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIG 624
                +DP+L +A+  SG     + E  P  LA+W+DP +V  R+G
Sbjct: 61  VDTTAIDPLLVKASLASGFSPLKLQEVFPDGLALWIDPEDVCCRVG 106


>SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)
          Length = 731

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 254 DRRLTKPLCQQNAPHPNVSPPDSMSRFAIKKNTIHS 147
           +RRL +   ++NAP P V  PD+ ++F +     H+
Sbjct: 486 ERRLERARNEKNAPSPPVVEPDTSAKFELPAQEGHA 521


>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 634 RPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSP 524
           R +  Y ++L+      P PW  +LV     +PT  P
Sbjct: 741 RKYTEYSVMLYAFNKVGPSPWGALLVRTAEDVPTAPP 777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,862,255
Number of Sequences: 59808
Number of extensions: 497328
Number of successful extensions: 1259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)