Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L22
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    30   2.0  
06_02_0266 - 13593346-13594151,13594425-13594743                       29   4.6  
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583...    29   6.1  
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    28   8.1  
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722...    28   8.1  

>07_03_1424 -
           26474464-26474514,26474549-26474635,26474905-26475006,
           26475149-26475260,26475405-26475463,26475559-26475633,
           26475734-26475832,26476128-26476343,26476426-26476500,
           26476583-26476670,26476757-26476902,26477240-26477347,
           26477417-26478436,26478437-26478715,26479471-26480520,
           26480636-26480692,26480780-26480837,26481379-26481458,
           26481598-26481654,26481764-26481833,26481967-26482202,
           26482341-26482445,26482534-26482680,26482758-26482823,
           26482916-26482979,26484040-26484200,26484308-26484400,
           26484487-26484600,26484684-26484803,26484893-26484976,
           26485061-26485216,26485389-26485811
          Length = 1885

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -3

Query: 712 RRAPRHKQSAPRRS*ATSDHQEFAH*PIPSDPVRI*NPAYVSANCKPGSPVASLVFSHRE 533
           RRA   + +A R    T+++ + A    PS    +  PA +     P SP+A++    R 
Sbjct: 9   RRASTSRAAARRVEAETNENDDLAAAAAPSSSSVVGGPAALPFMLPPRSPLAAIADPGRN 68

Query: 532 PLAVRYPPSTVWHTSRS 482
           P +    P ++  T R+
Sbjct: 69  PRSAPVTPKSLAGTPRA 85


>06_02_0266 - 13593346-13594151,13594425-13594743
          Length = 374

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
 Frame = +1

Query: 328 DLLFLTVPRRRFGIPSTLNYIDRRHSKKLDPLLKPYPNPEAVSSLTSVYRTAIDSCARLW 507
           DLL + V R  F    T+   + R     DP    +     + SL + + ++ D+C  L 
Sbjct: 43  DLLLINVARESF---CTMGMYELRPLLAGDPTFSDF-QLALLKSLLASFLSSPDNCPYLE 98

Query: 508 ----MVDTGLLEVPGARRQVKPPAILAYNWLTHKLDFRYELDPKVLVNERTPGGLTSLTI 675
               + + G LE      +    A+LA + L H  +   + DPK+ +     G   SL+I
Sbjct: 99  RGLELFNKGRLETGTELAKFCSHALLALDVLVHPREHCLQYDPKIPLRRAAHGDQGSLSI 158


>03_02_1035 -
           13557425-13557721,13557855-13558058,13558143-13558332,
           13558450-13558841,13558931-13559023,13559297-13559500,
           13559572-13559635,13559760-13559806,13559825-13559971,
           13560243-13560335,13560420-13560599,13560993-13561128,
           13561216-13561466,13561556-13561669,13561794-13561991,
           13562050-13562110,13562921-13563210
          Length = 986

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 601 DFRYELDPKVLVNERTPGGLTSLTIDVEPTACG 699
           + + EL+ +  VN+RTP  ++ +++   P ACG
Sbjct: 19  ELKEELNSQYKVNQRTPSPVSPVSVACFPRACG 51


>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 148 KMKQLYAW-KQLGYDFNGTKYIKDADRIRSPGAIHFVQELGDSEKFFIQ--YNNVPTGIK 318
           ++++LY W +Q G + +G          R PGA    ++L ++E FF+     + P GI 
Sbjct: 75  QLRELYDWLQQAGENSSGGVQTSSTTASRRPGAALSPEDLTETEWFFLMSASYSFPPGIG 134

Query: 319 FVG 327
             G
Sbjct: 135 LPG 137


>01_06_1768 +
           39771025-39771241,39771284-39771513,39772165-39772245,
           39772468-39772824,39772942-39773046
          Length = 329

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 352 RRRFGIPSTLN-YIDRRHSKKLDPLLKPYPNPEAVSSLTS 468
           RRR GIP+ +  ++ RRH+  L   L P    + +S + S
Sbjct: 26  RRRRGIPAAVTGFLSRRHAPALQRRLAPLHGEDLISPMRS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,624,227
Number of Sequences: 37544
Number of extensions: 556241
Number of successful extensions: 1569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)