Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L22
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)                       30   2.0  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 30   2.0  
SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   29   6.2  
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  28   8.2  
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
          Length = 542

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 29/102 (28%), Positives = 40/102 (39%)
 Frame = +1

Query: 394 RRHSKKLDPLLKPYPNPEAVSSLTSVYRTAIDSCARLWMVDTGLLEVPGARRQVKPPAIL 573
           RR S KL  +L+P  N  A++   +   T  +    +  +DT  LEV     Q    A  
Sbjct: 269 RRSSSKLIYVLEPLLNGSAITLDVNNTMTITNPSPNITRIDTNTLEVDFGSVQHAATASP 328

Query: 574 AYNWLTHKLDFRYELDPKVLVNERTPGGLTSLTIDVEPTACG 699
           +   LT  L F+    P  L   R P  +  L      TA G
Sbjct: 329 STQGLTVYLRFQTAGRPMELSGRRMPVTVHILLNGTSQTAAG 370


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 758  PREKTIRPLVAKSVM*ACASPQAVGSTSIVSDVRPPGVR 642
            P  +T+R  V +  M  C  P+ V +   V+DVR PG++
Sbjct: 1071 PHSQTLRASV-RGAMPCCVLPELVAAIKSVTDVRYPGIK 1108


>SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 457 TRPPLDLDKASEVDPVFYCVSCLCSLTSMESQISSLG 347
           T PPL++D   ++D +   V+C C L S E+ +S  G
Sbjct: 19  TGPPLEVDGIDKLDVLLRTVTCRCWLVS-ETHVSQTG 54


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 514 PPSTVWHTSRSQSGIPMSE 458
           PPS+ W+++R+  G+P+SE
Sbjct: 421 PPSSNWNSNRNSGGLPLSE 439


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 595 KLDFRYELDPKVLVNE---RTPGGLTSLTIDVEPTACGEAHA-YITDLATNGLIVFSL-- 756
           K DFR E+D ++L      RTPG + SLT D  P    +    +  + A +  ++FS   
Sbjct: 141 KKDFRKEID-RILAGRSSLRTPGSVASLTQDEIPNFLSDEECDFFINYAKHKRMMFSEAR 199

Query: 757 -GARAFWRIDHPSFVHG 804
            G     ++D P   HG
Sbjct: 200 GGLTLKEQVDVPKIRHG 216


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 299 LLYCIKNFSLSPSSWTKCIAPGERMRSASFIYFVPLKSYPNCFQAY 162
           L+YC++ FS     WT+ +A GER+ S +     P  S+ +  + Y
Sbjct: 114 LIYCLRFFSGPNGIWTR-LAKGERLGSYNLCDAEPTLSHMSITKLY 158


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 568 SPVASLVFSHREPLAVRYPPSTVWHTSRSQSGI 470
           +P    + S+ + LA+R PPS +W+T RS+  +
Sbjct: 13  TPQEDRICSNPQGLAIR-PPSVLWYTERSKDEV 44


>SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 592 HKLDFRYELDPKVLVNERTPGGLTSLTIDVEPTACGEAHAYITDLATNGLIVFSLGARAF 771
           ++LD R E   K+L  +  P     ++ DV  T   + H    D+ T+ L+VF     A 
Sbjct: 33  YRLDARAEY--KILPLDENPTRNNYVSFDVFITPKVKTHFVFRDIFTDSLLVFRTAKEAS 90

Query: 772 WRIDHPSFVHGEKA 813
             +D P+  +  +A
Sbjct: 91  RWLDAPNLSYWSQA 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,914,841
Number of Sequences: 59808
Number of extensions: 613998
Number of successful extensions: 2232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)