Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L20
         (847 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209722-1|BAD92959.1|  421|Homo sapiens mevalonate kinase varia...    55   3e-07
M88468-1|AAB59362.1|  396|Homo sapiens mevalonate kinase protein.      54   5e-07
BC016140-1|AAH16140.1|  396|Homo sapiens MVK protein protein.          54   5e-07
AF217536-1|AAF82406.1|  113|Homo sapiens truncated mevalonate ki...    54   5e-07
AF217535-1|AAF82407.1|  396|Homo sapiens mevalonate kinase protein.    54   5e-07
AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.        38   0.046
Z34278-1|CAA84032.1|  279|Homo sapiens mucin protein.                  31   6.9  

>AB209722-1|BAD92959.1|  421|Homo sapiens mevalonate kinase variant
           protein.
          Length = 421

 Score = 55.2 bits (127), Expect = 3e-07
 Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
 Frame = +1

Query: 235 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 399
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V ++LP + ++
Sbjct: 33  VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLNLPNIGIK 84



 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +2

Query: 560 DSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGAL 739
           D     ++ ++ +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL
Sbjct: 124 DDCAVTERLAVLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAAL 182

Query: 740 IQLL-KLKSSSGNFDAYYDQSSQXFTDTEKEIISEWA 847
           + +  ++ +   + D         +T  + E+I++WA
Sbjct: 183 LTVCEEIPNPLKDGDCV-----NRWTKEDLELINKWA 214


>M88468-1|AAB59362.1|  396|Homo sapiens mevalonate kinase protein.
          Length = 396

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 235 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 399
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59



 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +2

Query: 560 DSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGAL 739
           D     ++ ++ +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL
Sbjct: 99  DDCAVTERLAVLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAAL 157

Query: 740 IQLL-KLKSSSGNFDAYYDQSSQXFTDTEKEIISEWA 847
           + +  ++ +   + D         +T  + E+I++WA
Sbjct: 158 LTVCEEIPNPLKDGDCV-----NRWTKEDLELINKWA 189


>BC016140-1|AAH16140.1|  396|Homo sapiens MVK protein protein.
          Length = 396

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 235 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 399
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59



 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +2

Query: 560 DSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGAL 739
           D     ++ ++ +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL
Sbjct: 99  DDCAVTERLAVLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAAL 157

Query: 740 IQLL-KLKSSSGNFDAYYDQSSQXFTDTEKEIISEWA 847
           + +  ++ +   + D         +T  + E+I++WA
Sbjct: 158 LTVCEEIPNPLKDGDCV-----NRWTKEDLELINKWA 189


>AF217536-1|AAF82406.1|  113|Homo sapiens truncated mevalonate
           kinase protein.
          Length = 113

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 235 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 399
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++
Sbjct: 4   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 55


>AF217535-1|AAF82407.1|  396|Homo sapiens mevalonate kinase protein.
          Length = 396

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +1

Query: 235 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 399
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59



 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +2

Query: 560 DSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGAL 739
           D     ++ ++ +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL
Sbjct: 99  DDCAVTERLAVLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAAL 157

Query: 740 IQLL-KLKSSSGNFDAYYDQSSQXFTDTEKEIISEWA 847
           + +  ++ +   + D         +T  + E+I++WA
Sbjct: 158 LTVCEEIPNPLKDGDCV-----NRWTKEDLELINKWA 189


>AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.
          Length = 86

 Score = 37.9 bits (84), Expect = 0.046
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   CFKEELKTIHAFTQKTLTVDQW 74
           C  EEL  IHAF QKTLT DQW
Sbjct: 59  CLAEELPHIHAFEQKTLTPDQW 80


>Z34278-1|CAA84032.1|  279|Homo sapiens mucin protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 309 PRPKELHSDKGSKHSTRTSSPHTFAVRGSTGDHSIGADSQKSVPS*TGTRX*PANSLGDY 488
           PRP    S   S  ++ TS+P T     ST   + GA +  S    T T   P       
Sbjct: 56  PRPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPSPVPTTSTTSAPTTRTTSA 115

Query: 489 PTKSTMTIT 515
           P  ST + T
Sbjct: 116 PISSTTSAT 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,793,074
Number of Sequences: 237096
Number of extensions: 3174762
Number of successful extensions: 7257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7257
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)