Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L17
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   2.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   2.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.0  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    24   9.0  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 8    PMVIQRWYTEHFAVIQNKIHYVLP*VFHCCT 100
            P++++  +++HF+ ++N  H ++  +  CCT
Sbjct: 1212 PLILK--FSKHFSNLENSFHSLVQKLLSCCT 1240


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 287  NNINLQINNVFLFLNKYY 340
            N++   INNVFLFL  +Y
Sbjct: 1066 NDVEYYINNVFLFLLSFY 1083


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 38   HFAVIQNKIHYVLP*VFHCCTGSPVIDDL 124
            H ++  N IHY+L   +H    SPV   L
Sbjct: 1571 HPSLYSNPIHYLLRKAYHTTNASPVATSL 1599


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 VLTAAGTAHEVYSHVRNRGNQG 266
           V T  G    VYS ++N GN+G
Sbjct: 80  VSTMEGDEQIVYSFIKNSGNEG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,981
Number of Sequences: 5004
Number of extensions: 27289
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)