Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L17
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 122 NHQ*QGYQYNNEILKEVHSGFYF 54
           NHQ QGY YN +   + H+G Y+
Sbjct: 116 NHQQQGYDYNQQNQYDQHAGNYY 138


>SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 269 LTLISTVTHVAIDFMGCSRCGENFKA 192
           L + ++ TH  +DF  C RC E ++A
Sbjct: 191 LNMGNSSTHACLDFFFCRRCNEEYRA 216


>SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 155 DRNFRISLPTANHQ*QGYQYNNEILKEV 72
           D   R+  P++ H  QG +  NE+LKE+
Sbjct: 337 DSVLRLGFPSSFHHDQGKELENELLKEL 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,717
Number of Sequences: 59808
Number of extensions: 192190
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)