Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L17
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical pr...    27   8.0  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   8.0  
AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride ...    27   8.0  

>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 51  FKIKSTMYFLKYFIVVLVALSLMICSG 131
           F +KS +YF  Y  VVL+ + L++ +G
Sbjct: 187 FHLKSIIYFQVYMTVVLLVIPLVVMAG 213


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 69  MYFLKYFIVVLVALSLMICSG 131
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical
           protein T27D12.2a protein.
          Length = 906

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 69  MYFLKYFIVVLVALSLMICSG 131
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 69  MYFLKYFIVVLVALSLMICSG 131
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 868

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 69  MYFLKYFIVVLVALSLMICSG 131
           +YFL YFI+V + ++L I SG
Sbjct: 440 IYFLFYFIIVPICITLYIPSG 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,605
Number of Sequences: 27780
Number of extensions: 151872
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)