Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L16
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 31 0.84
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3) 30 2.0
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 29 3.4
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23) 29 4.5
SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061) 29 6.0
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) 29 6.0
SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21) 28 7.9
SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21) 28 7.9
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21) 28 7.9
SB_52460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 177 ECDCKIFCTCFTVFSISTADSATVITAMKYHRNFMFYNINSLHTALSRFASTLP 16
+CD C TV+ + T T +Y R F++YN + + SR S +P
Sbjct: 2 DCDILDKTICMTVYGVYNDAEVTSTTRSRYSR-FVYYNYRHVRCSRSREPSRIP 54
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +2
Query: 302 PYSTSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSL 481
P +T E +T K E + ++ +V P+T A EP TVV T +++
Sbjct: 3157 PDTTQAPETTVTPETTKAPETTVASET-TVTPETTVAPETTEEPETTVVPETTAVPETTI 3215
Query: 482 QELYTRPPRVEIVPASEVTPQ 544
+ T P +P S V P+
Sbjct: 3216 TQETTVAPETTSLPESTVAPE 3236
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 383 ASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVPASEVTPQPIKTSD 562
+++ P+T EP T+ L T +++ +T P + + P S V P+ I S+
Sbjct: 2239 STLAPETTMVPGTTLEPETTMALESTVASVTTMAPEFTLAPEITMTPESTVAPETIIASE 2298
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +2
Query: 299 TPYSTSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSS 478
TP +T E + EE + V +V P+T +A P T+V T ++
Sbjct: 4304 TPETTFAPETTMAPEATVAEETTMA-PVTTVAPETTKAPESTEAPETTMVPETTVAPETT 4362
Query: 479 LQELYTRPPRVEIVPASEVTPQ 544
+ T PP + P S P+
Sbjct: 4363 VTPEATVPPETTMAPESTEAPE 4384
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 383 ASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVPASEVTPQ 544
++V P+T A EP TVV T +++ + T P +P S V P+
Sbjct: 3023 STVAPETTIAPETTDEPETTVVPETTAVPETTVSQETTVAPETTALPESTVAPE 3076
>SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)
Length = 336
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 356 EEILLINDVASVQPDT---LEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVP- 523
+E+L++N+V + D + T +KSEPS+ V + ++ L T P + +P
Sbjct: 241 KELLVLNEVNTTVTDNENCVSKTEEKSEPSVAPVPIISRKEPDFQTPLKTDPVFKQPIPP 300
Query: 524 -ASEVTPQPIK 553
+S TP P+K
Sbjct: 301 KSSRKTPNPLK 311
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +2
Query: 332 SVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRV 511
+V T E + +V+P + T EP+ TVV T S+++ T P
Sbjct: 118 TVEPTSTVEPTSTVEPTNTVEPTSTVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTS 177
Query: 512 EIVPASEVTP 541
+VP S V P
Sbjct: 178 TVVPTSTVVP 187
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 371 INDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVPASEVTP 541
+ ++V+P T EP+ TV T S+++ T P +VP S V P
Sbjct: 107 VEPTSTVEPTNTVEPTSTVEPTSTVEPTNTVEPTSTVEPTSTVEPTSTVVPTSTVVP 163
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +2
Query: 332 SVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRV 511
+V T E + ++V+P + T P+ TVV T S+++ T P
Sbjct: 124 TVEPTSTVEPTNTVEPTSTVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTSTVVPTS 183
Query: 512 EIVPASEVTP 541
+VP S V P
Sbjct: 184 TVVPTSTVEP 193
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = +2
Query: 302 PYSTSDNEIYSVTQTLKNEEILLINDV-----ASVQPDTLEATTKKSEPSLTVVLPYTPR 466
P ST E +T EI D ++V PDT A P TVV T
Sbjct: 2778 PESTVATETTVAPETTAAPEITAAPDTTMVPKSTVAPDTTVAPESTVAPETTVVPETTLA 2837
Query: 467 DGSSLQELYTRPPRVEIVP----ASEVTPQP 547
G+++ + T P + P A+E+T P
Sbjct: 2838 PGTTVAQETTAAPETTVAPEITAATEITAAP 2868
>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 1109
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS 30
Y VLV LFS Y L+QLP I+ I H T L+S
Sbjct: 802 YLVLVDLFSDYIELVQLPDISSKTLIQQMKPIFATHGTPAVLIS 845
>SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061)
Length = 243
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 153 TCFTVFSISTADSATVITAMKYHRNFMFY--NINSLHTALSRFASTLPLIG 7
T FTV IS + A+ R F +N LH+ + RF LPL G
Sbjct: 23 TTFTVIFISQPALSVFRHAINASRQVRFICNGLNFLHSYIGRFCGILPLFG 73
>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
Length = 1213
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS 30
Y VLV LFS Y L+QLP I+ I H T L+S
Sbjct: 906 YLVLVDLFSDYIELVQLPDISSKTLIQQMKPIFATHETPAVLIS 949
>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
Length = 752
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS 30
Y VLV L+S Y L+QLP I+ I H T L+S
Sbjct: 590 YLVLVDLYSDYIELVQLPDMSSKTLIQQMKPIFATHGTPAVLIS 633
>SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 322
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS 30
Y VLV L+S Y L+QLP I+ I H T L+S
Sbjct: 103 YLVLVDLYSDYIELVQLPDMSSKTLIQQMKPIFATHGTPAVLIS 146
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 371 INDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVPASEVT 538
I V S P+T E++ +EP T T G++L T P + S VT
Sbjct: 1274 IATVISAAPETTESSESTAEPLTTAASESTVAPGTTLSPESTVAPGTTVASESTVT 1329
>SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 887
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS 30
Y VLV L+S Y L+QLP I+ I H T L+S
Sbjct: 668 YLVLVDLYSDYIELVQLPDMSSKTLIQQMKPIFATHGTPAVLIS 711
>SB_52460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 161 YFVLVSLFSRYPLLIQLPSSRR*NTIETSCSII*IHCTQHFLVS-RRPYHSS 9
Y VLV L+S Y L++LP I+ I H T L+S Y+SS
Sbjct: 35 YLVLVDLYSDYIELVKLPDMSSKTLIQQMKPIFATHGTPAILISDNGTYYSS 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,708,675
Number of Sequences: 59808
Number of extensions: 440262
Number of successful extensions: 1102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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