Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L09
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 75 5e-14
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 30 1.9
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 29 2.6
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.5
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 136 bits (329), Expect = 2e-32
Identities = 67/111 (60%), Positives = 82/111 (73%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 LLYWVVVSLLALS-SINCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPE 232
L + +++SL AL + N V F EKF D SWE WV S G + GKFK TAGKF+ D E
Sbjct: 737 LQHLLLLSLAALVIADNPVVHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAE 796
Query: 233 DDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 382
DKG++TSEDA+FY +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 797 ADKGIQTSEDAKFYGISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = +2
Query: 473 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 652
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+L DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 653 FLPP 664
FLPP
Sbjct: 885 FLPP 888
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 74.9 bits (176), Expect = 5e-14
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Frame = +2
Query: 392 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 541
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 542 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 646
D THL+TL+V+PDNT+EV ID E V G L D
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLED 121
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 369 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 199
P + SC CL V W T GLP L++G L R L+ + P S SL + V
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485
Query: 198 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 85
P++ G + + S+G+ S+ +SQ D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 330 WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 211
+TT+GLPS ++ +NL E NL S KP S + ++
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 527 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 652
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 279 SPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTER-PHMRLCSALT 455
SP SS + +++P + + +N DTL + T+N+ T + P +
Sbjct: 900 SPASSEKCTEKLSPRDNKAKEKLNGPSKQRQDTLGTKTSNYDHNTAKKNTPKATVLEESA 959
Query: 456 SVVQAPRR 479
S+ A RR
Sbjct: 960 SLTSANRR 967
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 172 VLTVHPIAFPRIIRKLLLKEYI 107
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -2
Query: 632 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 534
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,612,084
Number of Sequences: 59808
Number of extensions: 536915
Number of successful extensions: 1302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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