Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L09
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   251   4e-67
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   251   4e-67
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    94   7e-20
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    31   0.97 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    31   0.97 
Z81510-1|CAB04160.1|  367|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical ...    29   3.9  
U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine rece...    28   6.8  
Z29094-14|CAJ43434.1|  893|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like ...    27   9.1  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   9.1  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   9.1  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   9.1  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  251 bits (614), Expect = 4e-67
 Identities = 113/195 (57%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
 Frame = +2

Query: 80  LLALSSINCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSE 259
           L  ++ ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+
Sbjct: 7   LAIVAVVSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQ 65

Query: 260 DARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 436
           DA+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY 
Sbjct: 66  DAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYN 125

Query: 437 IMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNE 616
           +MFGPDICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E
Sbjct: 126 VMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGE 184

Query: 617 KVESGDLXADWDFLP 661
             ++G L  DWD LP
Sbjct: 185 SAQTGSLEEDWDLLP 199


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  251 bits (614), Expect = 4e-67
 Identities = 113/195 (57%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
 Frame = +2

Query: 80  LLALSSINCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSE 259
           L  ++ ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+
Sbjct: 7   LAIVAVVSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQ 65

Query: 260 DARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 436
           DA+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY 
Sbjct: 66  DAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYN 125

Query: 437 IMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNE 616
           +MFGPDICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E
Sbjct: 126 VMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGE 184

Query: 617 KVESGDLXADWDFLP 661
             ++G L  DWD LP
Sbjct: 185 SAQTGSLEEDWDLLP 199


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 13/152 (8%)
 Frame = +2

Query: 230 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 400
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 401 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 550
           +  +   +T Y IMFGPD CG  T KVH+IF YK   +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 551 YTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 646
            THL+TL+VKP   Y V +D + +  G++ +D
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSD 257


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 643
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++    A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 643
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++    A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900


>Z81510-1|CAB04160.1|  367|Caenorhabditis elegans Hypothetical
           protein F21D9.1 protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 157 PIAFPRIIRKLLLKEYITIYRR*CQQADNDPVQQLSFSIH 38
           P+ + RII      +++++YR  C++  +DP     +S+H
Sbjct: 82  PLLYQRIIIFEKKNDFVSVYRAMCKKKSSDPSTLAKYSVH 121


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 321 WSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTERPHM 434
           W SS L+  + T+  +  T+RS+  + S+ TCTE  HM
Sbjct: 15  WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HM 51


>AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical
           protein F09G2.8 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 159 TQLLSHESSGNFSSKNTSQFIEDNASKLTTTQYNSFHFRFTVPPS 25
           T L  HE   N   KNT     D  + +T  + + F  R  VP S
Sbjct: 6   TYLTPHEKEENGERKNTRMETHDGRADMTNFEMDLFDTRIEVPTS 50


>U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein212 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 616 LIVNEDFIGVVR---FHNQSVQMCVDIIFAADIFFDEMVLTLVTEDYMYLLGAWTT 458
           LI+   ++GV     FHNQ++   + II ++  FF  +V+  +   Y      W T
Sbjct: 255 LIIPIIYVGVTSLLYFHNQAINNFIVIIVSSHGFFSTIVMICIHVPYREFTLRWLT 310


>Z29094-14|CAJ43434.1|  893|Caenorhabditis elegans Hypothetical
           protein C07A9.3c protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -1

Query: 234 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTQYNS 55
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T TQ   
Sbjct: 254 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 313

Query: 54  F 52
           +
Sbjct: 314 Y 314


>Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical
           protein C07A9.3b protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -1

Query: 234 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTQYNS 55
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T TQ   
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 54  F 52
           +
Sbjct: 381 Y 381


>Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical
           protein C07A9.3a protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -1

Query: 234 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTQYNS 55
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T TQ   
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 54  F 52
           +
Sbjct: 381 Y 381


>AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like
           kinase protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -1

Query: 234 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTQYNS 55
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T TQ   
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 54  F 52
           +
Sbjct: 381 Y 381


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -1

Query: 336 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 160
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302

Query: 159 TQLLSHESSGNFSSKNTSQFIE 94
           T + S +SS N +++  S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -1

Query: 336 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 160
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399

Query: 159 TQLLSHESSGNFSSKNTSQFIE 94
           T + S +SS N +++  S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -1

Query: 336 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 160
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523

Query: 159 TQLLSHESSGNFSSKNTSQFIE 94
           T + S +SS N +++  S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,114
Number of Sequences: 27780
Number of extensions: 395099
Number of successful extensions: 1257
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)