Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L08
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   6e-36
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               32   0.50 
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          31   1.5  
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)                   30   2.7  
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score =  148 bits (358), Expect = 6e-36
 Identities = 91/229 (39%), Positives = 128/229 (55%), Gaps = 1/229 (0%)
 Frame = +3

Query: 141 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDMNF-PGGGQKVILLKNRL 317
           E++VLTVAT++  G  RF+RS   Y++ V V+G    W GG++   PGG  K+ LLK+ +
Sbjct: 35  ELLVLTVATEETDGYTRFMRSCSHYDVPVRVIGMNTSWKGGNVRTDPGGAHKINLLKDAV 94

Query: 318 EKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQY 497
            +    D K  +++F+D    + L     + K      DT    SA++F           
Sbjct: 95  AEY--KDKKNLVLMFSDRISTLRLA----MAK------DT----SAQEF----------- 127

Query: 498 PNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDH 677
                +    +SG FIGY P  ++IIN  P+KD+DDDQL+YT IYLDK+ R+   + LDH
Sbjct: 128 -----IKNLYSSG-FIGYAPVFHQIINEKPVKDEDDDQLFYTNIYLDKEKRDKFNMKLDH 181

Query: 678 KSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLIVHGNGPXKNT 824
           K+EIF NLNGA  +VQL+    + W Y  N V    PL VHGNGP K +
Sbjct: 182 KAEIFMNLNGAEEEVQLKFEGEKVWLY--NKVYSTTPLWVHGNGPSKES 228


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 27/97 (27%), Positives = 42/97 (43%)
 Frame = -1

Query: 551 VTYKSTRVQIWTYNFNVWILSCKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVI 372
           +T +S  V I +++  V I S     R   + SR +H  I  R      +I   + HD I
Sbjct: 331 ITSRSRHVTITSHHIKVTITSRS---RHVTITSRSRHVTITSRSRH-GTIISRSRHHDNI 386

Query: 371 TVSEKYYFLFVVSFHQLLKPVFQKNYFLSTTGEVHVT 261
           TV+  +  + V + H  +      NY   TT   H+T
Sbjct: 387 TVTTCHNHITVTTCHNHITSHQGHNYITVTTCHNHIT 423


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 117 NSHTQATDEVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEE 251
           NS   A++E+ +LT +  D   +   LRS K   ++V+ +G+G+E
Sbjct: 527 NSVVTASEEISLLTDSEGDQRVVTEELRSDKRIRVNVQGMGEGDE 571


>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 303 LKNRLEKLMKADNKEKIILFTDS-YDVMFLGNLDEIVKKFKSFPDT 437
           LK  L +L K D+ ++ I + D+    ++ GN  ++V     FPDT
Sbjct: 288 LKGLLYRLYKVDSSDQKISYLDTKICTIYTGNFRDVVNGLVQFPDT 333


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 505 MFGY*VASFASGQQNCSAEKSTRVSGKDLNFFTISS 398
           +FGY + S   G Q CS     R      NFFT  S
Sbjct: 317 IFGYDIISDGRGNQRCSVHPDRRTLKASFNFFTFWS 352


>SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 521 WTYNFNVWILSCKF--CIRPTKLFSRKKHTCI 432
           W + F ++   CK   C+ P +LFS K   C+
Sbjct: 7   WLFAFYIYACPCKLTVCVSPLRLFSCKLTVCV 38


>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 33  VELIFMMWFTQ-KMGLFIQLILCVFVILFNSH 125
           V++ FM+ FT  + GLF  +++C ++I    H
Sbjct: 229 VDMPFMLLFTDIRQGLFYAMLMCFWIIFTGEH 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,140,706
Number of Sequences: 59808
Number of extensions: 554752
Number of successful extensions: 1476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)