Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L07
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.1  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    26   2.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.6  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   4.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    24   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 108  PQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 239
            P +  P   P  G+  V  P   PPV +P A    VP+  +  P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 114 KPAPQL-LPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 245
           +P PQ   P    D + TP +   V + +++PA+ P+T ++ PS+
Sbjct: 58  QPEPQQETPKADAD-MSTPTMAEQVQTSFSNPASTPLTQTSSPSS 101


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 201  SPAAVPITYSALPSATYYVR*NKIISR 281
            SP A+P+TYS    A++    NK++S+
Sbjct: 1109 SPLALPMTYSPTERASFLSYKNKVMSQ 1135


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 105 QPQKPAPQLLPYTGLDYVYTPGLVPPVISPYAS 203
           QP K A    P T  D  Y P L   +I  Y S
Sbjct: 664 QPDKRALLFNPRTANDMTYPPSLFSSLIKEYTS 696


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 144 GLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT--YYVR*NKII 275
           G  Y   PG + PV+S    P  + +   A P     Y +R +++I
Sbjct: 178 GYSYAPVPGKLSPVVSVQIHPKDLGVILIAYPDGVVLYSIRTDEVI 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,087
Number of Sequences: 5004
Number of extensions: 24767
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)