Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L07
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    32   0.16 
03_01_0348 + 2739523-2741006,2742046-2742232                           30   0.83 
04_03_0902 + 20707834-20708187                                         29   1.4  
06_01_0486 - 3455030-3455770                                           29   1.9  
10_07_0180 - 13879648-13880064                                         28   2.5  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   2.5  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    27   7.7  
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    27   7.7  
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920...    27   7.7  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    27   7.7  
01_06_1377 + 36764461-36765339                                         27   7.7  
01_01_0070 - 542603-542686,542803-543441                               27   7.7  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 75  PCLWPLQALRQPQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 248
           P + P+Q  ++P  PAP   P         P + PP  +P  +PA  P T  ALP AT
Sbjct: 243 PSVAPVQPPQRP--PAPATKPPPSFPPQLAPTMPPPAHAPAETPAP-PTTPPALPPAT 297


>03_01_0348 + 2739523-2741006,2742046-2742232
          Length = 556

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  PLQALRQPQKPAPQLLPYTGLDYVYTPGLVPPVISPYA 200
           PL  LR P +P P++LP+     +  P   PP  +P A
Sbjct: 24  PLPLLRPPPRPLPRVLPFAART-LAAPAAPPPEAAPAA 60


>04_03_0902 + 20707834-20708187
          Length = 117

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 PQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPA--AVPITYSALPSAT 248
           P KP P    +T  +   TP   PP   P+ SP     P TYS +   T
Sbjct: 45  PDKPPPYRNSHTKTNTPRTPLYAPPPPLPHTSPTPEPTPPTYSPIAKTT 93


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +3

Query: 108 PQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 248
           P    P   PY      Y P  +PP   PY  P   P T   +P  T
Sbjct: 82  PTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPT 128


>10_07_0180 - 13879648-13880064
          Length = 138

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 136 GRSCG----AGFWGCLRAWSGQRHGQQSE 62
           GR CG    AG  G LR W G RHG + +
Sbjct: 74  GRRCGGCRRAGATGRLRRWGGVRHGGERD 102


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 75  PCLWPLQALRQPQKPA-----PQLLPYTGLDYVYTPGLVPPVISPYASPAAV 215
           P + P+  +  P  P      P++ PY     V TPG  PP I+PY SP  +
Sbjct: 547 PIVTPMPPIIYPSPPEVTPSPPEITPYPSPPEV-TPG--PPEITPYPSPPEI 595


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 87  PLQALRQPQ--KPAP-QLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 239
           P   LR P    PAP Q +P+ G      PG  PP     A+P++ P  +  +P
Sbjct: 218 PTGGLRTPYGGPPAPSQQVPFGGAPQ--WPGTQPPPFGAQAAPSSQPPPFMGVP 269


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 99  LRQPQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 245
           L+Q Q P PQL  +        PG  PP + P ASP   P   +  PS+
Sbjct: 252 LKQQQPPPPQLFNW--------PGHAPPQLPPGASPLFPPGPAAFHPSS 292


>11_03_0044 -
           9198016-9199143,9199579-9199674,9199771-9199846,
           9200330-9200547,9200703-9200918,9201336-9201521,
           9201607-9201708,9201828-9202495,9203248-9203314
          Length = 918

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 138 YTGLDYVYTPGLVPPVIS 191
           Y GL  V+TP L+ PVIS
Sbjct: 78  YVGLSTVHTPALLTPVIS 95


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/58 (31%), Positives = 22/58 (37%)
 Frame = +3

Query: 21  YSKQTTCPTNSSFSSLCWPCLWPLQALRQPQKPAPQLLPYTGLDYVYTPGLVPPVISP 194
           Y    + P N++      P    LQ L  P  P P  LP      V TP   PP  +P
Sbjct: 25  YCSAVSVPNNNTHHRSSSPTQTTLQQLHSPDSPPPPPLP---TPTVTTPTPPPPPPAP 79


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 165 PGLVPPVISPYASPAAVPITYSALPSATY 251
           P   PP  SPY  P   P  YSA P   Y
Sbjct: 160 PQYPPPSSSPYYFPPPPPPAYSAPPPPQY 188


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 75  PCLWPLQALRQPQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 245
           P + P      P  P P   P         P   PPV +P  +PAA+P   +  P A
Sbjct: 93  PPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVA 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,188
Number of Sequences: 37544
Number of extensions: 179496
Number of successful extensions: 658
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)