Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L07
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.013
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.052
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 30 0.85
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 1.1
SB_58543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 27 4.5
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 6.0
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 35.9 bits (79), Expect = 0.013
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 105 QPQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPI 221
+P K P +P G+ PG+VPPV++P +P A P+
Sbjct: 117 RPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPM 155
>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 33.9 bits (74), Expect = 0.052
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 135 PYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALPSAT 248
PY YV P + PP +S PY SP V + Y LP T
Sbjct: 331 PYVSPPYVSPPYVSPPYVSPPYVSPPYVTLPYVTLPYLT 369
Score = 31.5 bits (68), Expect = 0.28
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 108 PQKPAPQLLPYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALP 239
P P LPY +V P + PP ++ PY SP+ V Y A P
Sbjct: 217 PTAPTYVALPYITPTFVAPPYVTPPYVTPPYVSPSYVAPPYVAPP 261
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 135 PYTGLDYVYTPGLVPPVISP-YASPAAVPITYSALPSAT 248
PY YV P + PP ++P + +P V T+ A P T
Sbjct: 246 PYVSPSYVAPPYVAPPYVAPTFVAPPYVAPTFVAPPYVT 284
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 132 LPYTGLDYVYTPGLVPPVIS-PYASP 206
LPY L YV TP + PP ++ PY +P
Sbjct: 365 LPYLTLLYVATPYVTPPYVAPPYVAP 390
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 114 KPAPQLLPYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALP 239
+P P Y L Y+ + PP ++ PY +P V +Y A P
Sbjct: 214 QPNPTAPTYVALPYITPTFVAPPYVTPPYVTPPYVSPSYVAPP 256
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 135 PYTGLDYVYTPGLVPPVISP-YASPAAVPITYSALP 239
PY +V P + PP ++P Y +P V +Y A P
Sbjct: 271 PYVAPTFVAPPYVTPPYVAPSYVAPTYVAPSYVAPP 306
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 135 PYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALPSAT 248
PY YV P + PP +S PY SP V Y + P T
Sbjct: 321 PYVVQLYVAPPYVSPPYVSPPYVSPPYVSPPYVSPPYVT 359
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 29.9 bits (64), Expect = 0.85
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 QTTCPTNSSFSSLCWPCLWPLQALRQPQ-KPAPQLLPYTGLDYVYTPGLVPPVISPYASP 206
QT+ P + SF L PC P+ P P+P +L T + TP I ASP
Sbjct: 1148 QTSSPLSPSFGIL--PCDTPVDQNTVPFITPSPAVLGGTDMHSGNTPKAPLKKILTRASP 1205
Query: 207 AAVPITYSALPSAT 248
+ ++ S PS+T
Sbjct: 1206 SHPSVSQSLFPSST 1219
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 84 WPLQALRQPQKPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 239
WP+ A QP PQL P ++ P ++PP++ P P +P+ LP
Sbjct: 2587 WPIVAPMQPPFFGPQLPP----PDMFPPQMMPPMV-PMMLPPMLPLPPPGLP 2633
>SB_58543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 84 WPLQALRQPQKPAPQLL--PYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSATYYV 257
W + +QP+ PAP ++ P + L G P +P IT+ A S YY
Sbjct: 425 WYAERSKQPKTPAPSIILTPVSRLPKFSANGYSPARHAPGLEDYFAVITFKAALSPDYYF 484
Query: 258 R 260
R
Sbjct: 485 R 485
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 146 PGLRLYTRLSTSCDISIRFSGCCPHH 223
P R LS CD+++RF G C H
Sbjct: 566 PAYRHTCCLSRGCDLAVRFVGKCARH 591
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 118 GFWGCLRAWSGQRHGQQSEENEE 50
G W ++W G R ++ EEN+E
Sbjct: 1735 GSWANRKSWDGVRSPEEEEENQE 1757
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,872
Number of Sequences: 59808
Number of extensions: 194113
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -