Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L05
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    38   0.001
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    33   0.040
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    32   0.12 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    31   0.21 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   6.0  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 36/147 (24%), Positives = 47/147 (31%), Gaps = 7/147 (4%)
 Frame = +1

Query: 259 GGYHAASPRSAEPADMKYQHPLH-SGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXX 435
           G +    P   EP +     P+H   G   P  P+   P   +PP  P            
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP--PPMHHEPGEHMPP 274

Query: 436 PDVKPPPAPHDHRHLQHAAXGWHAPVVSPHYGAGS---PVTLH---GGYPMPVHQHHMLR 597
           P +   P  H      H   G H P    H+  G    P  +H   G +  P   HH   
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334

Query: 598 DIQPSPHPLHHHAMERDQPEEDTPTSD 678
           +  P P   HH   E + PE      D
Sbjct: 335 EHMPPPPFKHHELEEHEGPEHHRGPED 361


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 744 VRXRETELDAALLELFGECFEVVARGGVLLGLIPL 640
           VR RE ++  A L LFG   +V+  G  LLGL PL
Sbjct: 581 VRGRERDIQLARLALFGAAKQVLNNGMTLLGLTPL 615


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 535 GSPVTLHGGYPMPVHQHHMLRDIQPSPHPLHH---HAMERDQPEEDTPTSDDLEAFAKQF 705
           G+ V + GGY        ++ D   + HP++H     ++R+  ++ T  ++  + F  QF
Sbjct: 181 GTTVAVMGGYKGLKEVRRIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQF 240

Query: 706 KQRRI 720
           K+R +
Sbjct: 241 KKRNV 245


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 657  LGLIPLHGVMMQRMRRGLDVSEHMVLVHGHWVSSMQCDGRARTVMRA 517
            LGLIP+    +  MR   DV   + L+  ++VS++  +  A T +RA
Sbjct: 966  LGLIPIPVPPLDHMRLSEDVPAFLFLIKHYYVSAVLVNSEADTALRA 1012


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 309 VPASVALGRVAVPGGARDRE 368
           V A+ ALGR+AVPGGA   E
Sbjct: 102 VLAAKALGRLAVPGGALTSE 121


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = +1

Query: 214  AATTYMPAEMELGNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPPA 393
            AA   +P  + + NI     +SP S  P D     PL    S SP AP+       +PP 
Sbjct: 964  AAPPSIPPPLPVSNI----LSSPTSEPPKDHPPSAPLSKPVSTSPAAPL-----ARVPPV 1014

Query: 394  DPWAMXXXXXXXXXPDVKPPPAP 462
               +           D  P P P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVP 1037


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 323 NGCWYFMSAGSALRGDAAWYPPMLPSSISA-GMYVVAAMAPYLRSTVD 183
           +G W  ++ GSA+R  A  Y     SSI+A  +Y  + +    RST D
Sbjct: 4   SGLWELITIGSAVRNVAKSYLKAEASSITAKQLYDASKITSSKRSTSD 51


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 637 MERDQPEEDTPTSDDLEAFAKQFKQRRIKLGFT 735
           +E ++P    P  D  +AFA +      KLGF+
Sbjct: 99  LEFEEPNRKQPKKDGTDAFANELNLFAKKLGFS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,814
Number of Sequences: 5004
Number of extensions: 59047
Number of successful extensions: 228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)