Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L05
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 77 2e-14
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 77 2e-14
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 54 1e-07
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 54 1e-07
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 54 1e-07
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 54 1e-07
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 44 1e-04
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 44 1e-04
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 44 1e-04
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 44 1e-04
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 37 0.021
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 35 0.065
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 33 0.20
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.26
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 33 0.35
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 33 0.35
Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical p... 31 1.4
Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical pr... 31 1.4
U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein. 31 1.4
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical ... 30 2.4
AC024783-3|AAL32245.1| 273|Caenorhabditis elegans Hypothetical ... 29 3.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 5.7
AC024783-2|AAL32246.1| 275|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 7.5
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 7.5
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 7.5
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 23 7.7
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 9.9
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 9.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 9.9
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 9.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 9.9
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 28 9.9
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/69 (57%), Positives = 45/69 (65%)
Frame = +1
Query: 646 DQPEEDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXX 825
D E+ P DDLE FAKQFKQRRIKLG+T ADVG+ALGTLYGN+F +
Sbjct: 185 DDSEQTCP--DDLEGFAKQFKQRRIKLGYTQADVGVALGTLYGNIF-SQTTICRFEALQL 241
Query: 826 XLKNMCKFK 852
KNMCK K
Sbjct: 242 SFKNMCKLK 250
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/69 (57%), Positives = 45/69 (65%)
Frame = +1
Query: 646 DQPEEDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXX 825
D E+ P DDLE FAKQFKQRRIKLG+T ADVG+ALGTLYGN+F +
Sbjct: 185 DDSEQTCP--DDLEGFAKQFKQRRIKLGYTQADVGVALGTLYGNIF-SQTTICRFEALQL 241
Query: 826 XLKNMCKFK 852
KNMCK K
Sbjct: 242 SFKNMCKLK 250
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 658 EDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXXXLKN 837
+D ++LEAFA+ FK++RIK GFT DVG+ALG YG F + KN
Sbjct: 303 DDRIDMNELEAFAQTFKKQRIKFGFTQGDVGVALGKRYGTDF-SQTTISRFEALNLSFKN 361
Query: 838 MCKFK 852
MCK +
Sbjct: 362 MCKLR 366
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 658 EDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXXXLKN 837
+D ++LEAFA+ FK++RIK GFT DVG+ALG YG F + KN
Sbjct: 290 DDRIDMNELEAFAQTFKKQRIKFGFTQGDVGVALGKRYGTDF-SQTTISRFEALNLSFKN 348
Query: 838 MCKFK 852
MCK +
Sbjct: 349 MCKLR 353
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 658 EDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXXXLKN 837
+D ++LEAFA+ FK++RIK GFT DVG+ALG YG F + KN
Sbjct: 288 DDRIDMNELEAFAQTFKKQRIKFGFTQGDVGVALGKRYGTDF-SQTTISRFEALNLSFKN 346
Query: 838 MCKFK 852
MCK +
Sbjct: 347 MCKLR 351
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 658 EDTPTSDDLEAFAKQFKQRRIKLGFTXADVGLALGTLYGNVFXTXXXXXXXXXXXXXLKN 837
+D ++LEAFA+ FK++RIK GFT DVG+ALG YG F + KN
Sbjct: 290 DDRIDMNELEAFAQTFKKQRIKFGFTQGDVGVALGKRYGTDF-SQTTISRFEALNLSFKN 348
Query: 838 MCKFK 852
MCK +
Sbjct: 349 MCKLR 353
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/40 (60%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 652 PEEDTPTSD-DLEAFAKQFKQRRIKLGFTXADVGLALGTL 768
P D T LE FA+ FKQRRIKLG T ADVG AL L
Sbjct: 224 PTSDMDTDPRQLETFAEHFKQRRIKLGVTQADVGKALAHL 263
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/40 (60%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 652 PEEDTPTSD-DLEAFAKQFKQRRIKLGFTXADVGLALGTL 768
P D T LE FA+ FKQRRIKLG T ADVG AL L
Sbjct: 262 PTSDMDTDPRQLETFAEHFKQRRIKLGVTQADVGKALAHL 301
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/40 (60%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 652 PEEDTPTSD-DLEAFAKQFKQRRIKLGFTXADVGLALGTL 768
P D T LE FA+ FKQRRIKLG T ADVG AL L
Sbjct: 262 PTSDMDTDPRQLETFAEHFKQRRIKLGVTQADVGKALAHL 301
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/40 (60%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 652 PEEDTPTSD-DLEAFAKQFKQRRIKLGFTXADVGLALGTL 768
P D T LE FA+ FKQRRIKLG T ADVG AL L
Sbjct: 224 PTSDMDTDPRQLETFAEHFKQRRIKLGVTQADVGKALAHL 263
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 36.7 bits (81), Expect = 0.021
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Frame = +1
Query: 271 AASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLP-PADPWAMXXXXXXXXXPDVK 447
A P+ A PA P P+P P+ P ++P PA P A P
Sbjct: 55 APYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPA---PYPQHAVPAPA 111
Query: 448 PPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSPHPLH 627
PPPAP+ + A P P P H YP P H +P P +
Sbjct: 112 PPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPH--YPPPPPAPHSAYIDHSAPRPAY 169
Query: 628 -HHAMERDQPE 657
H+ QP+
Sbjct: 170 IEHSAPPPQPQ 180
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = +1
Query: 448 PPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSPHP 621
PPP P+ H H A H P+ G PV G+ +P QH P P P
Sbjct: 70 PPPYPYQHPHQPPPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPP 127
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 457 APHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSP 615
+PH H +H H+PV S A SP ++H + +HH + Q SP
Sbjct: 760 SPHVSEHFEHHEEAQHSPVASQEEAARSP-SVHSSHASEHFEHH--EEAQDSP 809
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 448 PPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTL---HGGYPMPVHQHHMLRDIQPSPH 618
PP P RH +H + H+P H G P HG + P H HH R PS H
Sbjct: 359 PPHCPG--RHGRHGSRS-HSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGR--SPSRH 413
Query: 619 PLHHH 633
HHH
Sbjct: 414 GHHHH 418
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 436 PDVKPPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSP 615
P PPP P +H Q HAP PH GA P + QH + P
Sbjct: 463 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPPQMM-----QQQQQHIQQYMVMQGP 514
Query: 616 HPLH 627
H +H
Sbjct: 515 HQMH 518
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 436 PDVKPPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSP 615
P PPP P +H Q HAP PH GA P + QH + P
Sbjct: 788 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPPQMM-----QQQQQHIQQYMVMQGP 839
Query: 616 HPLH 627
H +H
Sbjct: 840 HQMH 843
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 436 PDVKPPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSP 615
P PPP P +H Q HAP PH GA P + QH + P
Sbjct: 788 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPPQMM-----QQQQQHIQQYMVMQGP 839
Query: 616 HPLH 627
H +H
Sbjct: 840 HQMH 843
>Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical
protein Y49E10.14 protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +1
Query: 448 PPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVH---QHHMLRDIQPSPH 618
PPP + H H QH P P++ A P G P PV Q H L + QP
Sbjct: 230 PPPIAYYHHHPQHQQQ--FLPFPMPYFLAPPPQAQQGA-PFPVQYIPQQHDLMNSQPMYA 286
Query: 619 PL 624
P+
Sbjct: 287 PM 288
>Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical
protein T16H12.4 protein.
Length = 376
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 242 ISAGMYVVAAMAPYLRSTVDGVLPARRLSSLQLAYSFA-KTARGSRCXAVAAGATSHHRI 66
+SA M+V MA + L L L ++ +A+ S C A+ G H I
Sbjct: 205 LSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSSAKSSECNAIHVGFPHHELI 264
Query: 65 RQRATCAC 42
R+ C C
Sbjct: 265 TTRSFCVC 272
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +2
Query: 380 HCHPPTPGRCTSITHTHINQT*SLPRLLTTTATCSMRPXAGTRPSSAR--ITVRARPSHC 553
H PP+ + + H+ L+TT + C P T+P S+R I + HC
Sbjct: 239 HTLPPSSAKSSECNAIHVGFPHH--ELITTRSFCVCHPD--TKPISSRGFICTQCGARHC 294
Query: 554 MEDTQCP-CTNTICSETSSPRRIR 622
+CP C T+ + R R
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFR 318
>U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +1
Query: 448 PPPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVH---QHHMLRDIQPSPH 618
PPP + H H QH P P++ A P G P PV Q H L + QP
Sbjct: 230 PPPIAYYHHHPQHQQQ--FLPFPMPYFLAPPPQAQQGA-PFPVQYIPQQHDLMNSQPMYA 286
Query: 619 PL 624
P+
Sbjct: 287 PM 288
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +1
Query: 502 HAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSPHPLHHHAMER--DQPEEDTPTS 675
H+P+ P++ G P PVH L+ PH H E D ++P S
Sbjct: 7 HSPITEPYFSFGERHLPFAAQPCPVHVFKTLKVEYRQPHNSSHVKQEERADDSHSNSPAS 66
>AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical
protein Y34B4A.8 protein.
Length = 604
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 392 PTPGRCTSITHTHINQT*SLPRLLTTTATCSMRPXAGTRPSSARITVRARPSHCMEDTQC 571
P+P S+T +H + P + A C+ P + RP S I V ARP+ +Q
Sbjct: 489 PSPFNGGSLTRSHTEHRPNRPPPPSFRAACADTPKS--RPISYNIAVGARPNESHSVSQP 546
Query: 572 PCTNTICSE 598
P T+ E
Sbjct: 547 PKGMTVSME 555
>AC024783-3|AAL32245.1| 273|Caenorhabditis elegans Hypothetical
protein Y45G5AL.1a protein.
Length = 273
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 553 HGGYPMPVHQHHMLRDIQPSPHPLHHHAMERDQPEEDTPTSDDLE 687
H G+ PVH+++ P+ +P HH M D +P S D +
Sbjct: 57 HQGFVNPVHEYNYDATDGPNMYPSDHHGMHSDSA---SPPSGDFD 98
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/84 (26%), Positives = 27/84 (32%)
Frame = +1
Query: 337 SPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVKPPPAPHDHRHLQHAAXGWHAPVV 516
SP P G P P+D P PP PH H + P
Sbjct: 59 SPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPS-GPPHRPHPHPSRRPRPTRLPRPSR 117
Query: 517 SPHYGAGSPVTLHGGYPMPVHQHH 588
SPH A P G+ + +HH
Sbjct: 118 SPHSDAPEPSAATDGFELVFGKHH 141
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 250 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 390
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 381 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 427
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 250 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 390
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 402 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 448
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 250 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 390
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 387 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 433
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +1
Query: 469 HRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSPHPLHH 630
H H + G HAP H+G H G H H +PH HH
Sbjct: 587 HGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHH 640
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +1
Query: 457 APHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSPHPLHH 630
AP H H + G H+P H+G H G+ H H H HH
Sbjct: 435 APAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGH-HGEHHHAPAHHGHHGEHGTHH 491
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Frame = +1
Query: 463 HDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYPMPVHQHHMLRDIQPSP-----HPLH 627
H H H HAP H+G H G+ HH SP H H
Sbjct: 450 HSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509
Query: 628 HHA 636
HHA
Sbjct: 510 HHA 512
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = +1
Query: 466 DHRHLQHAAX-GWHAPVVS-PHYGA-GSPVTLHGGYPMPVHQ-HHMLRDIQPSPHPLHH 630
DH H H G H S H+G G T HG + P H HH + H HH
Sbjct: 645 DHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHH 703
>AC024783-2|AAL32246.1| 275|Caenorhabditis elegans Hypothetical
protein Y45G5AL.1b protein.
Length = 275
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 553 HGGYPMPVHQHHMLRDIQ--PSPHPLHHHAMERDQPEEDTPTSDDLE 687
H G+ PVH+++ D P+ +P HH M D +P S D +
Sbjct: 57 HQGFVNPVHEYYSNYDATDGPNMYPSDHHGMHSDSA---SPPSGDFD 100
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 389 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSMRPXAGTRPSSA 520
P P R S+T T T LP TTT+T P A T PS A
Sbjct: 237 PTKPSRTRSLTSTSTT-TAKLP---TTTSTTFAAPQASTEPSEA 276
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/93 (32%), Positives = 40/93 (43%)
Frame = +2
Query: 389 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSMRPXAGTRPSSARITVRARPSHCMEDTQ 568
P T T +T T T + P TTT T S + T PS++ TV PS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEP---TTTLTTSTASTSTTEPSTS--TVTTSPS------T 455
Query: 569 CPCTNTICSETSSPRRIRCIITPWSGISPRRTP 667
P T+T+ S +SS + TP S S +P
Sbjct: 456 SPVTSTVTSSSSSS---TTVTTPTSTESTSTSP 485
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/93 (32%), Positives = 40/93 (43%)
Frame = +2
Query: 389 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSMRPXAGTRPSSARITVRARPSHCMEDTQ 568
P T T +T T T + P TTT T S + T PS++ TV PS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEP---TTTLTTSTASTSTTEPSTS--TVTTSPS------T 455
Query: 569 CPCTNTICSETSSPRRIRCIITPWSGISPRRTP 667
P T+T+ S +SS + TP S S +P
Sbjct: 456 SPVTSTVTSSSSSS---TTVTTPTSTESTSTSP 485
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 7.5
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Frame = +1
Query: 283 RSAEPADMKYQHPL----HSGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVKP 450
R+ E AD KY + H GG P V PPA +M P++ P
Sbjct: 2 RNGEDAD-KYAASVAEVAHGGGGPKKDDQV--------PPAPDASMPTPQQQQQQPNLPP 52
Query: 451 PPAPHDHRHLQHAAXGWHAPVVSPHYGAGSPVTLHGGYP 567
P P++H QH P S G H G P
Sbjct: 53 PQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMP 91
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/66 (34%), Positives = 27/66 (40%)
Frame = +1
Query: 169 AGKTPSTVDLRYGAMAATTYMPAEMELGNIGGYHAASPRSAEPADMKYQHPLHSGGSPSP 348
A PS D +G A P E E G A S RS P Y P+ GG+P P
Sbjct: 513 APSPPSGPDPDFGGDTAAAG-PTEEEF--FTGESALS-RSKGPTGDGYGPPVFPGGAPPP 568
Query: 349 GAPVIG 366
P +G
Sbjct: 569 PVPAVG 574
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 454 PAPHDHRHLQHAAX-GWHAPVVSPHYGAGSPVTLHGGYPMPVHQHH 588
P PH HLQ+ G P PHY P GY Q H
Sbjct: 77 PPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPPPQSGYYHHQQQQH 122
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 169 AGKTPSTVDLRYGAMAATT 225
A TPSTV +G+ A+TT
Sbjct: 590 ASNTPSTVKFGFGSGASTT 608
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 334 GSPSPGAPVIGNPWTSLPP 390
GS S AP+ G P T+ PP
Sbjct: 622 GSGSSVAPLFGAPKTTAPP 640
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 538 SPVTLHGGYPMPVH-QHHMLRDIQPSPHP 621
S V +H YP H QH+ L +Q PHP
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 538 SPVTLHGGYPMPVH-QHHMLRDIQPSPHP 621
S V +H YP H QH+ L +Q PHP
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 626 CSGCGEGWMSLSIWCWCTGIGYPPCSVTGEPAP*CGLTTGAC 501
C C +G+ +++ C G C TG C L TG C
Sbjct: 1067 CEKCADGYFNITSGDGCEDCG---CDPTGSEDVSCNLVTGQC 1105
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +1
Query: 442 VKPPPAPHDHRHL-QHAAXGWHAPVVSPHYGAG-SPVTLHGGYPMPVHQ----HHMLRDI 603
V PP PHD HL Q+ H P + +PV G +P +H H D
Sbjct: 454 VHPPAWPHDVYHLTQYPPTYPHPPGTVGYPDVQIAPVDYPGWHPNDIHMTQLPHGFTPDA 513
Query: 604 QP--SPHPLHHHAMERDQP 654
Q PHP H E P
Sbjct: 514 QKLVPPHPQMSHFTEYPTP 532
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +1
Query: 442 VKPPPAPHDHRHL-QHAAXGWHAPVVSPHYGAG-SPVTLHGGYPMPVHQ----HHMLRDI 603
V PP PHD HL Q+ H P + +PV G +P +H H D
Sbjct: 496 VHPPAWPHDVYHLTQYPPTYPHPPGTVGYPDVQIAPVDYPGWHPNDIHMTQLPHGFTPDA 555
Query: 604 QP--SPHPLHHHAMERDQP 654
Q PHP H E P
Sbjct: 556 QKLVPPHPQMSHFTEYPTP 574
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 27.9 bits (59), Expect = 9.9
Identities = 27/119 (22%), Positives = 36/119 (30%), Gaps = 2/119 (1%)
Frame = +1
Query: 313 QHPLHSGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVKPPPAPHDHRHLQHAA 492
QHP S P P AP+ + P DP+ P P ++
Sbjct: 621 QHPAESAAPPRPVAPMEPLFKQAPPQPDPFGWDSSGHTGDAPTASEPVQELSPTPEASSS 680
Query: 493 XGWHAPVVSPHYGAGSPVTLHGGY--PMPVHQHHMLRDIQPSPHPLHHHAMERDQPEED 663
G AP P +P P R P P P + + +PEED
Sbjct: 681 TGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPPPPRPAPANKEKPKEPEPEED 739
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 538 SPVTLHGGYPMPVH-QHHMLRDIQPSPHP 621
S V +H YP H QH+ L +Q PHP
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 626 CSGCGEGWMSLSIWCWCTGIGYPPCSVTGEPAP*CGLTTGAC 501
C C +G+ +++ C G C TG C L TG C
Sbjct: 1067 CEKCADGYFNITSGDGCEDCG---CDPTGSEDVSCNLVTGQC 1105
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 545 SHCMEDTQCPCTNTICSETSSPRRIRCIITPWSGISPRRT 664
SH TQ P T T + T++ RR+ ++T + +PRRT
Sbjct: 276 SHTTPPTQTPPTQTPPTTTTT-RRVTVVVTSPTTTTPRRT 314
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 626 CSGCGEGWMSLSIWCWCTGIGYPPCSVTGEPAP*CGLTTGAC 501
C C +G+ +++ C G C TG C L TG C
Sbjct: 1067 CEKCADGYFNITSGDGCEDCG---CDPTGSEDVSCNLVTGQC 1105
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +1
Query: 442 VKPPPAPHDHRHL-QHAAXGWHAPVVSPHYGAG-SPVTLHGGYPMPVHQ----HHMLRDI 603
V PP PHD HL Q+ H P + +PV G +P +H H D
Sbjct: 496 VHPPAWPHDVYHLTQYPPTYPHPPGTVGYPDVQIAPVDYPGWHPNDIHMTQLPHGFTPDA 555
Query: 604 QP--SPHPLHHHAMERDQP 654
Q PHP H E P
Sbjct: 556 QKLVPPHPQMSHFTEYPTP 574
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,366
Number of Sequences: 27780
Number of extensions: 405925
Number of successful extensions: 1859
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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