Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L04
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   132   5e-31
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   29   6.4  
SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  132 bits (318), Expect = 5e-31
 Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
 Frame = +3

Query: 342 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRGITTVISYKTIE 512
           K+FDD  P  +  L  + +      IGD   WL+++L YN+ GGK  RG++ + S + + 
Sbjct: 19  KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76

Query: 513 KPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFND 692
           + E  T+  L++A  LGWCVE FQA+ +V DDIMD S  RRG PCWYR+PEVG   A ND
Sbjct: 77  REEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVG-NIAIND 135

Query: 693 SLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGH 812
            ++I  ++F  LK + +    Y+ + ELF+E   +    H
Sbjct: 136 GIMIEQTVFRLLKKHIKHQSYYVDVVELFHEAGIKDEASH 175


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 201 CHEVQCAGRTIYVSIFNSSVHVAIHTAEDRQ*WCRIIQEKVISRDHN 61
           CH   C  RT YV++ +  V +AI        W ++ +  +++   N
Sbjct: 416 CHAASCTSRTTYVNVMHFRVCLAISRIHVLTSWLQLFRHSLVAHASN 462


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 357 LLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK-PEKVTE 533
           ++ E +M +  +  L+E      WL+K    + +G +   G    ++ +T+E   E+  E
Sbjct: 98  MIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQRAVSGEEAGVNPETVESWKERARE 157

Query: 534 HTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPC 647
            T     K  W V+  +  C+    + + S   RGM C
Sbjct: 158 ITRGWDAKNVWNVD--ETGCL-WRGLPEKSLNERGMRC 192


>SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +3

Query: 192 LHDIVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSANMTTASKNL-------EIINEKKMF 350
           +H  +D  +F C+  TRK  ++ +P++      S    + SK          I+N    F
Sbjct: 99  IHSEMDSEMFRCVSSTRKRNFRPYPEIFENALQSGFFLSDSKTYCVDGSIRNILNTLTSF 158

Query: 351 DDLLPEVIM 377
             +LPE+ +
Sbjct: 159 CWILPEITL 167


>SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -3

Query: 216 HSCLLCHEVQCAGRTIYVSIFNSSVHVAI-----HTAEDRQ*WCRIIQEKVISRDHNSQH 52
           H  ++C  V   GR ++ S  +S + V I      T  +R+ WC   +EK+IS  HN  H
Sbjct: 86  HDNIICAIVY-NGRYVFTSS-HSCIKVCILFCTGFTGGERRGWCDETEEKLISGSHNVIH 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,930,710
Number of Sequences: 59808
Number of extensions: 574391
Number of successful extensions: 1347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)