Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L03
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   1.6  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    27   2.7  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   4.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   8.4  

>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 108 HCARELLPVVRMTSPAITKSSENQKGEKMSPGQTTDV 218
           H    L PV+R    A   S +N KG+K++P Q T++
Sbjct: 401 HGYDNLSPVMRALFIASGSSFKNFKGKKLAPFQNTEI 437


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 160 LSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHS 273
           +  + I+  KK HPDK+  ++Q A  P+  PP   +H+
Sbjct: 48  IKRKYIELVKKHHPDKMKNASQLA--PTESPPEINKHN 83


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 151 GDVILTTGSSSRAQWKIESVKGQENVTIL 65
           G+V+  TGS SR + KI+ +K ++   +L
Sbjct: 109 GEVVYVTGSFSRWKKKIQLLKSEDYTVLL 137


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 144 TSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTTQQSDPIT 290
           TS + T SS       + P  T    P S+     ++TT T+  S P+T
Sbjct: 265 TSASATSSSAQYNTSSLLPSSTPSSTPLSSA----NSTTATSASSTPLT 309


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 KAKKCHPDKLLTSNQQAMLPSIGPPPPVQ 267
           +A    P+KLL   + A    I PPPP+Q
Sbjct: 163 RAAVTDPEKLLEFARSAEGSIIAPPPPLQ 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,946
Number of Sequences: 5004
Number of extensions: 44645
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)