Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L03
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460...    30   1.6  
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231...    29   2.1  
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    29   2.8  
08_02_0885 + 22268287-22268988                                         29   3.7  
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    29   3.7  
01_06_0045 - 25925083-25925307                                         29   3.7  
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539...    28   6.5  

>05_03_0501 +
           14744913-14745107,14745545-14745571,14746002-14746097,
           14746479-14746769
          Length = 202

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 166 HRKIKKAKKCHPDKLLTSNQQAMLPSIGPPP----PVQHSSLIQSPG 294
           HR++K  K   P K     ++  +P + PPP    P+ HS L  +PG
Sbjct: 120 HRRLKDRKP--PPKRQQLEEEVHVPVMAPPPVLPPPLPHSELTMAPG 164


>01_06_0359 +
           28722524-28722613,28722794-28722863,28723062-28723159,
           28724029-28724167,28724243-28724370,28724500-28724592,
           28724707-28724757,28725405-28725470,28725568-28725633,
           28725900-28725977,28726248-28726427,28726502-28726577,
           28726660-28726823,28727569-28727931
          Length = 553

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 199 PDKLLTSNQQAMLPSIGPPPPVQHSSLIQSP 291
           P+  + S+  AM   + PPP VQ +S+ Q P
Sbjct: 466 PNPFMASDPFAMSNQVAPPPSVQMASMTQQP 496


>02_03_0300 +
           17454622-17455402,17455535-17456977,17457015-17457317,
           17458429-17458519,17458623-17459757,17459998-17460077,
           17460449-17460533,17460614-17460705,17461079-17461147,
           17461227-17461263,17461351-17461433,17461695-17461840,
           17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 124 YSPL*G*HHPQLLSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPP-PPVQHSSLIQSPGFE 300
           Y P  G H PQ L ++ +K    C   K  T       PSI  P   +Q + +     F+
Sbjct: 595 YIPSSGVHQPQPLENQMVKGQDLCQTHKTSTKYVADGNPSINTPVEHIQRTPIEVMSSFQ 654

Query: 301 SLN 309
           S+N
Sbjct: 655 SVN 657


>08_02_0885 + 22268287-22268988
          Length = 233

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 65  QYSYIFLTFYGFYFPLCTRATPRC 136
           ++S +FL FY F+F LC   T  C
Sbjct: 14  EFSPLFLLFYFFFFLLCLTMTHNC 37


>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 302 DSNPGDWIRLLCCTGGGGPIDGNIA 228
           D +PGDW+ +    G GG  DG++A
Sbjct: 31  DGHPGDWLGVDWDAGAGGRHDGSLA 55


>01_06_0045 - 25925083-25925307
          Length = 74

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 490 YMLLCVVPQCGT*LMPCFCKLLG 558
           Y+ +CV  QCGT   PC CK+LG
Sbjct: 3   YVPVCV--QCGTHSNPCRCKVLG 23


>02_02_0584 -
           11853149-11853573,11853673-11853787,11853868-11853981,
           11854049-11854108,11854265-11854600,11854681-11854724,
           11854776-11855507,11855736-11855921,11856012-11856153,
           11856250-11856300
          Length = 734

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 178 KKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHSSLIQSP 291
           KK          T+++ A  PS  P PPVQ SS  Q+P
Sbjct: 498 KKKTAVKKKSAATTSKPASPPSPPPSPPVQQSSSDQTP 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,943
Number of Sequences: 37544
Number of extensions: 281548
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)