Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L03
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03) 30 1.2
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 30 1.2
SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 29 2.9
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_498| Best HMM Match : DUF1067 (HMM E-Value=5.8) 28 5.0
SB_2089| Best HMM Match : rve (HMM E-Value=4.3e-20) 28 6.6
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 27 8.7
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05) 27 8.7
>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
Length = 307
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 139 G*HHPQLLS--HRKIKKAK---KCHPDKLLTSNQQAMLPSIGPPPPVQHSSLIQSPGFES 303
G P+ LS H ++K K K HP KLLT Q I P P + LI++P
Sbjct: 3 GKSQPKFLSPAHFEVKPPKPSVKGHPVKLLTPGQCETHKKIDPKPMIVEKPLIKTPEARE 62
Query: 304 LN 309
L+
Sbjct: 63 LD 64
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 145 HHPQLLSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPPPPVQH 270
H P +S KAKK HP ++ + P GPPP H
Sbjct: 1167 HKPHKVSKNYKNKAKKNHPSSKISDKLREDAPG-GPPPVATH 1207
>SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +1
Query: 154 QLLSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHSSLIQSPGFES 303
Q L RK + AK C P L Q LPS PPPP ++ +PG S
Sbjct: 62 QKLMRRKAE-AKPCAPRPPLPRRAQCFLPS-PPPPPCEYQQ--SAPGASS 107
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 79 FLDLLRILFSTVHESYSPL*G*HHPQLLSHRKIKKAKKCHPDKL 210
+L LL + +H YSP QL RK+K CHPD+L
Sbjct: 953 YLALLSYRNTPLHNGYSP------SQLSMGRKLKTRVPCHPDEL 990
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 79 FLDLLRILFSTVHESYSPL*G*HHPQLLSHRKIKKAKKCHPDKL 210
+L LL + +H YSP QL RK+K CHPD+L
Sbjct: 1785 YLALLSYRNTPLHNGYSP------SQLSMGRKLKTRVPCHPDEL 1822
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 79 FLDLLRILFSTVHESYSPL*G*HHPQLLSHRKIKKAKKCHPDKL 210
+L LL + +H YSP QL RK+K CHPD+L
Sbjct: 807 YLALLSYRNTPLHNGYSP------SQLSMGRKLKTRVPCHPDEL 844
>SB_498| Best HMM Match : DUF1067 (HMM E-Value=5.8)
Length = 185
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 138 RMTSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTTQQSDPITWIRIFKLTD 317
+ T P + S + +S +TD P S + TT + + +DP R LT
Sbjct: 94 KSTDPTLISSDMSTDPSPISSDMSTDPTPISKEMSSDPTTISSDKSTDPTLISRTCPLTL 153
Query: 318 LMMKQGC 338
+++ + C
Sbjct: 154 VLLVRTC 160
>SB_2089| Best HMM Match : rve (HMM E-Value=4.3e-20)
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 79 FLDLLRILFSTVHESYSPL*G*HHPQLLSHRKIKKAKKCHPDKL 210
+L LL + +H Y P QL RK+K+ CHPD+L
Sbjct: 124 YLALLSYRNTPLHNGYFP------SQLSMGRKLKRRVPCHPDEL 161
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 148 HPQLLSHRKIKKAKKCHPDKLLTSNQQAML-PSIGPPPPVQHSSLIQSP 291
H Q S ++++ + TS ++ P++G P PV ++S+++SP
Sbjct: 179 HGQHSSRTAVRRSASFSSSQRRTSESESRSKPAVGKPRPVGNASVVRSP 227
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 196 DIFSPF*FSDDLVIAGDVILTTGSSSRAQWKIESVKGQENVTILVFSIGC 47
D+F+ + D+ IA I+ RA WK +S+KG N L FS C
Sbjct: 76 DLFAREVSTVDVRIASHAIV---DRPRASWKRQSLKGISNFHFLAFSSLC 122
>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
Length = 872
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 272 LCCTGGGGPIDGNIAC 225
+ CTGGGGP+ +AC
Sbjct: 648 MTCTGGGGPLSLAVAC 663
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,984
Number of Sequences: 59808
Number of extensions: 345044
Number of successful extensions: 860
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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