Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L03
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 31 0.47
Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane... 30 1.1
AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical ... 29 1.9
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 29 1.9
AF016683-2|AAB66194.1| 709|Caenorhabditis elegans Hypothetical ... 29 3.3
Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical pr... 27 7.7
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 27 7.7
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 144 TSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCT--TQQSDPITWIRI 302
T P T S+ Q + P T+ + TS +TTT T T SD + W++I
Sbjct: 276 TEPTTTTSTTTQTTTTV-PTSTSTISTTSTTTTTPTTTTTTTSTTTSDDLLWVKI 329
>Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical
protein C08B11.4 protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 284 WIRLLCCTGGGGPIDGNIACWFDVSSLSG*HFFAFLI 174
W+ C TG GGP+D I W LS F A+L+
Sbjct: 703 WVVFACTTGNGGPVD-TILSWRLFVPLSKITFCAYLL 738
>AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane
protein NRF-6 protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 284 WIRLLCCTGGGGPIDGNIACWFDVSSLSG*HFFAFLI 174
W+ C TG GGP+D I W LS F A+L+
Sbjct: 703 WVVFACTTGNGGPVD-TILSWRLFVPLSKITFCAYLL 738
>AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2A.1 protein.
Length = 382
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 111 CARELLPV-VRMTSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTT-TCTTQQSDP 284
C R + P V +T+P T +N E M T PT+ V ++ + T TT P
Sbjct: 61 CMRMVPPDDVSITTPVPTDDPDNPVTEPMVTDPTAPTAPTTEVPISSTATEPVTTAMPCP 120
Query: 285 ITWI 296
W+
Sbjct: 121 TDWM 124
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 90 FTDSIFHCARELLPVVRMTSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTT 269
FT+ IF EL+ T+ T ++ Q + + QTT +P + TT T
Sbjct: 341 FTEDIFGSIEELMSPPTTTTTLQTTTTRPQTTKTTTTPQTTTTRPQTTKTTTTPQTTTTR 400
Query: 270 QQSDPITWIRI 302
Q+ IR+
Sbjct: 401 LQTTRRPPIRV 411
>AF016683-2|AAB66194.1| 709|Caenorhabditis elegans Hypothetical
protein K09F6.4 protein.
Length = 709
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 132 VVRMTSPAITKSSENQKGEKMSPGQTTDVKPTSNVA 239
++ T+P ++ S +Q G+K S G T V+P NV+
Sbjct: 600 IITTTAPIVSSSDASQGGQKASGGSMT-VQPYQNVS 634
>Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical
protein F34H10.3 protein.
Length = 248
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 118 ESYSPL*G*HHPQLLSHRKI-KKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHSSLIQS 288
E Y P+ Q LS K+ C P + N + LP +GP QH IQS
Sbjct: 49 EEYMPVEVLQTIQQLSSPKLGHNGLPCRPKAMTFVNGRPTLPEMGPLQQCQHLQQIQS 106
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 150 PAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTTQQSDPIT 290
P+ T + + + TT KPT++ + + STTT TT + T
Sbjct: 597 PSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATT 643
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 150 PAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTTQQSDPIT 290
P+ T + + + TT KPT++ + + STTT TT + T
Sbjct: 597 PSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATT 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,544
Number of Sequences: 27780
Number of extensions: 265554
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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