Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L02
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 31 0.16
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 0.66
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 29 1.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 1.2
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.5
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 28 2.0
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 2.7
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 27 4.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.2
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 6.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 8.2
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 8.2
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 8.2
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 233 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPSS 337
I+ E+S + +Q P S PP+ ALPA + PSS
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 245 RSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 388
+S + SL +P S T Q + L+ PSS AQ KP N I
Sbjct: 217 QSTLFSLNTAPFSATSQQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEI 264
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 378 DRGFCVL-AGCALGTEDGFFSRAAGSAHCGG-VWEIGDCRRDNMNDL 244
D C++ AG + GF R +A C G VW I CR +++L
Sbjct: 429 DGPMCLIGAGVGIAPFRGFVQRRLANAACTGKVWIIQGCRDQKLDEL 475
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 134 SRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI--VYERSFMLSLRQSPISQTPPQCAL 307
S++ + PA P+ S P +I + P T + YE+ LS P A
Sbjct: 292 SKKKVTPAPAPAPESEPSKP--SIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSAT 349
Query: 308 PAALLKNPSSVPNAQPASTQKPRSNSI 388
PA + PS+ +A ST N++
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAINAV 376
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 260 SLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 388
S R S QTPP LP+ LL + P+A P +P+ NS+
Sbjct: 15 SKRSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 2.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 336 EDGFFSRAAGSAHCGGVWE 280
ED F+++A+G+ + GG W+
Sbjct: 36 EDNFYAKASGNLYLGGTWK 54
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 30 QVSCVEFCKINTTKVFNNSQRHLSRGRPPTANRFLQGG 143
++SC E N+ V NS++H+ +R+L GG
Sbjct: 588 KLSCSEMTPQNSQAVIKNSEKHIVMKPWDICSRYLHGG 625
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 266 RQSPISQTPPQCALPAALLKNPS-SVPNAQPASTQKPRSNSIS 391
R+ P + +CA+ +LKNP+ S+ A ST +P S +S
Sbjct: 298 RERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 117 TANRFLQGGS*SRIPLKCLMSIPAHRAEPSTP--PLLEVQE 233
T N+ + GG P+ IPA AEP+ P P EV E
Sbjct: 875 TVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +1
Query: 7 IASFYSTNKCLVWNFVKLTPRKFLIIVSVTYREAGHPQPIDSFKEGPDHGSRSNA*CLFQ 186
I Y+ N +W+ K + F +V+ P P++S D S S L
Sbjct: 39 IVEKYAKNCNTIWDSSKFWKQFFEASANVSLSGVEEPVPVESNPSDQDVMSNSTEADLQL 98
Query: 187 HTGRNHL 207
HT HL
Sbjct: 99 HTKNEHL 105
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 143 VLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQT 289
VL+TD +P+V+SS G + P +R + E + ISQ+
Sbjct: 109 VLVTDEQDVPEVWSSKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQS 157
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 272 SPISQTPPQCALPAALLKNPSSV 340
+P P CALPA LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 95 PIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 229
P + Q + S + V+++ + + SSTP TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,927
Number of Sequences: 5004
Number of extensions: 72170
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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