Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_L02
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 31 0.93
12_02_0674 - 21745321-21746223,21746229-21747608 31 1.6
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 30 2.8
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 29 3.7
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 6.5
03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733 29 6.5
07_03_1721 - 29023979-29025295 28 8.6
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 28 8.6
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 266 RQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSISFDESQETFSMDL 427
+Q P Q Q P A P+ P A A QKP S+S++E + FS+ +
Sbjct: 8 QQQPQQQQEQQ---PVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFSLPI 58
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = +2
Query: 125 SIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCA 304
S S R L T ++P + P T S P R + +LS S I TP C
Sbjct: 510 STASTRELSTATGKIPSTPRTNPLSTATSKIPSTPR-----TSLLSSSTSKIPSTPSTCE 564
Query: 305 LPAALLKNPSSVPNAQPASTQKPRSNS 385
L A K PS+ + P ST +++S
Sbjct: 565 LSTATGKIPSTTCTS-PLSTATGKTSS 590
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 272 SPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSISFDESQ 406
+P P LP+ + P P QP++ KP +S DES+
Sbjct: 184 APFRMALPTPPLPSQVPAPPPPPPPPQPSAANKPHLTDLSSDESE 228
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Frame = +2
Query: 86 SASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSL 265
SASP + S ++P+R P P Y++ P + P V +
Sbjct: 92 SASPPVAKGAVSPAVPTRPQNAPTPVTPPKEYNAPPPVELTPPAPTHVAPVAPPQAAVEN 151
Query: 266 RQSPISQTP---PQCALPAALLKNPSSVPNAQPASTQKPRSNSI 388
+ TP P PA + ++P QP S P S I
Sbjct: 152 PAPVLPGTPALLPSVQAPAPSVARNPNLPIVQPPSVNNPPSRPI 195
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = +2
Query: 149 ITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKN 328
+T P+ +P +P IYS T + I S + S S T P + P + + N
Sbjct: 1629 LTSPSYVPTSLPHSPTSPIYSAT---SPIYSPSSPIYSPTSLSYSPTSPVYS-PTSPVYN 1684
Query: 329 PSSVPNAQPASTQKPRSNSISFDESQETFS 418
P+S + + + P S S S+ + ++S
Sbjct: 1685 PTSSAYSPTSPSYNPTSPSYSYSPTSPSYS 1714
>03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733
Length = 271
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 833 GVKLMAKDSVLNATXKVQSRLTKXESIPNNNENKVICRNQNPYL 702
GV + +D K R SIPN +N I + NP+L
Sbjct: 111 GVVIFVRDGEYKVCRKAPCRWVNYTSIPNAKKNSKINKRGNPHL 154
>07_03_1721 - 29023979-29025295
Length = 438
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 218 PGGTRIVYERSFMLSLRQSPISQTP--PQCALPAALLKNPSSVPNAQPASTQKPRS 379
P G +Y+ S + + P P C A++LK NA+P ST +PR+
Sbjct: 142 PAGDAPLYQLSIKGDQTATAVKFAPDSPLCNSMASVLKIGEQSKNAKPTSTAQPRN 197
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +2
Query: 293 PQCALPAALLKNPSSVP------NAQPASTQKPRSNSISFDESQETFSMDL 427
P+ LPA N SSVP NAQP+S KP S+S Q S++L
Sbjct: 59 PRARLPATTSAN-SSVPRTTGSSNAQPSSETKPASSSSDAKLEQHEKSLNL 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,041,765
Number of Sequences: 37544
Number of extensions: 499623
Number of successful extensions: 1434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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