Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_L02
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                97   2e-20
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)                      30   2.2  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       29   3.8  
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)                   28   8.7  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 46/90 (51%), Positives = 63/90 (70%)
 Frame = +2

Query: 119 SQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQ 298
           +++IPSRRV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L LR SP++++PP 
Sbjct: 13  ARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLELRNSPLAKSPP- 71

Query: 299 CALPAALLKNPSSVPNAQPASTQKPRSNSI 388
             LP  ++   +   N +P   +KP   S+
Sbjct: 72  ANLP--VIPGVTCEDNGKPEPEEKPEVTSL 99


>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
          Length = 678

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +2

Query: 119 SQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQ 298
           SQ+  S +V +T+ + +P V   T   T+ S       +VY R    S+  SP+S   PQ
Sbjct: 115 SQAQFSAKVTLTN-SHLPSVIKPTEATTLKSYKTKVPTLVYSRVENTSVESSPLSTATPQ 173

Query: 299 CA-LPAALLKNPSSVPNAQPASTQKPRSNSISFDESQETFS 418
            +     +   PS +  A+  S  +P   S+  + +Q T S
Sbjct: 174 SSGYKNGVTSEPSHL-CAKATSVTQP-IGSVGIEPNQTTRS 212


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 128  IPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERS 250
            +PS  +++  P+    VYS  P G I   +P G +IVY  S
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPS 1163


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 318 Y*RIRLRYPTRSRPAHKNLDLTRYHSTSRRKPS 416
           Y ++RL YP+ S P  K+  LT Y STS   P+
Sbjct: 131 YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 601 GNDVLSNMFFCCV*LWLTSQTAHRRLKDRASETFASLRWQAVF 473
           GN VL + +   + +++ SQ + +  K  + ETFA  RW+ +F
Sbjct: 553 GNPVLVDCYASVLHMFVVSQNSRKLAK--SEETFAEWRWKKIF 593


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 179 YSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQ-TPPQCALPAALLKNPSSVPNAQP 355
           ++S    T +++    T      SF ++L  S  S  +P   A PA+L    S    A P
Sbjct: 659 FASFTSFTSFTSFASFTSFTSFTSFAIALLASTASPASPASLASPASLASPASPASLASP 718

Query: 356 ASTQKPRSNSISF 394
           AS   P S + +F
Sbjct: 719 ASLASPASTTTAF 731


>SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)
          Length = 290

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 137 LKESIGCGWPASR*VTLTIIKNFRGVNFTKFHTRHLLVE*KD 12
           LK +IG GWPA R  T   I+ + G+        HL+ +  D
Sbjct: 42  LKAAIGGGWPAYRKSTHPSIRQYWGIRDELHVAEHLIFKGAD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,654,339
Number of Sequences: 59808
Number of extensions: 567630
Number of successful extensions: 1423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)