Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K23
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    30   2.6  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    28   7.9  

>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 322 EKIKRMQQKSEEIERREKELASQGGATLKWTAE*DTEERASVNKQEKYR 468
           E+ +R ++K EE  RR++E   +     K   E + EER    K+EK R
Sbjct: 485 EEERRQREKEEEERRRQEEERKRREEEEKERREREEEERRQREKEEKKR 533


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/87 (21%), Positives = 44/87 (50%)
 Frame = +1

Query: 316 DLEKIKRMQQKSEEIERREKELASQGGATLKWTAE*DTEERASVNKQEKYRYKN*CGCVM 495
           +L+ ++      E++  RE +         +   E  ++ +  +N +++ + ++  GC  
Sbjct: 42  ELKDVRNKLASQEQLFVRESQTRKFAETKARSMEEEISKLQKCLNDKDE-QLRSSTGCTE 100

Query: 496 QVLFVRNNFSNLVNYYYLLIVCKTKCS 576
           Q+ F+ NN+SN V Y++ L   ++K S
Sbjct: 101 QMHFL-NNYSNYVQYFHELDDLRSKLS 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,501
Number of Sequences: 37544
Number of extensions: 302118
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)