Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K23
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 374 FSRLSISSLF--CCILFIFSRS 315
           +S L I SL   CC+++IFS S
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTS 85


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 374 FSRLSISSLF--CCILFIFSRS 315
           +S L I SL   CC+++IFS S
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTS 85


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 622 WITYWNKPQFAFYKISSVDTSCFSKS 699
           W+++W KP+ A  +++   TS  + S
Sbjct: 263 WVSFWIKPEAAPARVTLGVTSLLTLS 288


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 493 MQVLFVRNNFSNLV 534
           +++LF+ NN+ NLV
Sbjct: 619 VELLFINNNYINLV 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,016
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)