Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K20
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    29   0.60 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    29   1.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    29   1.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   4.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   7.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   7.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   7.4  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   9.8  

>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 QLLYPMLVSRYRLRSVSQMHGRLLRAILHLEGV 290
           Q L PML S  R+ SV   +GR +  I+ L+GV
Sbjct: 63  QNLSPMLRSMKRISSVKAAYGRSMEEIIELKGV 95


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 280 SRVYWVDAGKPTLPDDDPNRKEAFEDCARDYNCSIR 387
           +RVY+VD    T   DDP    A +     Y C  R
Sbjct: 378 ARVYFVDHNTKTTTWDDPRLPSALDQDVPQYKCDFR 413


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 498 LGASAPSVEVDHHVIEAISHAVTVAVLSELSHVAL 394
           L AS PS  +D+H+   I+  + VAV+ +    AL
Sbjct: 155 LNASVPSYRIDYHLERLINFGLKVAVVRQTETAAL 189


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 213 VSRYRLRSVSQMHGRLLRAILHLE 284
           V+  RLRS+ + +G+L R +LH E
Sbjct: 885 VNEARLRSLFESYGKLYRVVLHPE 908


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 182  EIRNPKAEQSRHIIPNK*NGHISKNNKPK 96
            EI    +++  ++  NK  GH+ K+ KPK
Sbjct: 1893 EIEQASSKKPGYVEKNKDKGHMKKSKKPK 1921


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +1

Query: 229 CDLSHKCTDGYCGPFYISRVYWVDAG------KPTLPDDDPNRKEAFEDCARDYNCSIRI 390
           C L  K  D + G  Y+  +++  A       KP     D +  E +  C RD N +  I
Sbjct: 85  CKLYEKAIDKHSGKKYVEAIWYSRAYAKRMEIKPEYLLPDRHINEVYVSCGRDENLTSCI 144

Query: 391 VE 396
           +E
Sbjct: 145 IE 146


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 459 VIEAISHAVTVAVLS-ELSHVALDYSNGAVVVSCAIFECFLPIGVIIR 319
           +I+AIS+ V   V S  L+ V  +Y NG V+ + A+FE    + +IIR
Sbjct: 553 IIQAISNMVVPCVQSIALNGVQSEY-NGRVLAAFAVFEA---VALIIR 596


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 490 CSEPLFLSPQGLKWLAHYQQCRF 558
           C+ PLF   +G+K+ +++Q  RF
Sbjct: 139 CNSPLFNEDKGIKYGSYHQMYRF 161


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 199 CIRCLCHVTGCDLSHKCTDGYCGPFYISRVY-WV 297
           CI C C  T C      ++ Y GP  + + Y W+
Sbjct: 165 CILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWI 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,096
Number of Sequences: 5004
Number of extensions: 64296
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)