Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K20
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929...    29   3.4  
06_01_0664 + 4850445-4850879,4853155-4854186                           29   5.9  

>09_06_0140 +
           21090686-21091645,21092142-21092221,21092705-21092906,
           21093052-21093327,21093414-21093482,21093638-21093785,
           21094080-21094228,21094897-21095061,21095623-21095732,
           21095868-21095946,21095947-21096240
          Length = 843

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 277 ISRVYWVDAGKPTLPDDDPNRKEAFEDCARDYNCSI-RIVESYMAK-FGKDC 426
           + R+ W+ +  PT+P+DD + + + E+   +++  + R ++S   K F  DC
Sbjct: 472 LERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDC 523


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 139 GIMCLLCSALGLRISNLNSSCIRCLCHVTGCDL 237
           G  C LC  L       NS+C +C C +  C L
Sbjct: 75  GPPCGLCGRLTSIYDYTNSTCSKCYCDIDNCGL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,236
Number of Sequences: 37544
Number of extensions: 414414
Number of successful extensions: 1059
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)