Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K20
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 209 HRIQELFRFEIRNPKAEQSRHIIPNK*NGHISKNNKP 99
           H  ++  RF++ +PKA      + N  NG   +   P
Sbjct: 283 HAPKQTVRFKVHDPKAHSKGGTLENTINGRADEEAAP 319


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 406 PCSSRLF*WSSCSLL---RNLRMLP 341
           PCSS  F W  C LL    NL +LP
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLIILP 107


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 406 PCSSRLF*WSSCSLL---RNLRMLP 341
           PCSS  F W  C LL    NL +LP
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLIILP 107


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 406 PCSSRLF*WSSCSLL---RNLRMLP 341
           PCSS  F W  C LL    NL +LP
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLIILP 107


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 191  FRFEIRNPKAEQSRHIIPNK*NGHISKNNKPKGHVT 84
            FR E+   KA Q +   P+  NGH      P GH T
Sbjct: 1733 FREEMDPSKAMQFQ-TFPHPGNGHSGTMGPPVGHPT 1767


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 568 VVVKIDIVGSARAILD 521
           ++VK D+ GS  A+LD
Sbjct: 481 IIVKGDVAGSVEALLD 496


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 188 RFEIRNPKAEQSRHIIPNK*NGHISKNNKP 99
           RF++ +PKA      + N  NG   +   P
Sbjct: 352 RFKVHDPKAHSKGGTLENTINGRADEEAAP 381


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 188 RFEIRNPKAEQSRHIIPNK*NGHISKNNKP 99
           RF++ +PKA      + N  NG   +   P
Sbjct: 352 RFKVHDPKAHSKGGTLENTINGRADEEAAP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,167
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)