Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K19
         (567 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q98RX7 Cluster: DNA gyrase A-subunit; n=1; Guillardia t...    33   3.5  
UniRef50_Q17Q73 Cluster: P130; n=1; Aedes aegypti|Rep: P130 - Ae...    33   4.7  
UniRef50_A0BIC5 Cluster: Chromosome undetermined scaffold_11, wh...    32   8.1  

>UniRef50_Q98RX7 Cluster: DNA gyrase A-subunit; n=1; Guillardia
           theta|Rep: DNA gyrase A-subunit - Guillardia theta
           (Cryptomonas phi)
          Length = 877

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
 Frame = -3

Query: 484 LFITLRSYIL-ISENQPYNVDLN------LYLLRYYI--SVSFQISNIINRENLLASINI 332
           L IT  SY+L I + QP  V+L       L+  R  I  ++ F++ NI+ ++N+L  I+I
Sbjct: 387 LQITFSSYMLCIVDKQPILVNLKEILSLFLHFRRKIIRKNIKFELKNILKKKNILKGISI 446

Query: 331 QIQKI 317
            ++KI
Sbjct: 447 SLEKI 451


>UniRef50_Q17Q73 Cluster: P130; n=1; Aedes aegypti|Rep: P130 - Aedes
           aegypti (Yellowfever mosquito)
          Length = 748

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = -3

Query: 454 ISENQPYNVDLNLYLLRYYISVSFQISNIINRENLLASINIQIQKIYRFNI 302
           +S+ +P N  LNL+  +YY + + ++ ++    NL +   ++I  I+  ++
Sbjct: 547 VSKRKPGNASLNLFFRKYYATAALRLKHLCAHLNLSSRAMVEIWTIFEHSV 597


>UniRef50_A0BIC5 Cluster: Chromosome undetermined scaffold_11, whole
           genome shotgun sequence; n=6; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_11,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 931

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -3

Query: 484 LFITLRSYILISENQPYNVDLNLYLLRYYISVSFQISNIINRENLLAS 341
           ++I L+   +I +N  Y+     Y L+Y I + FQI+N IN  +LL+S
Sbjct: 18  IYIQLQMKNMIVQN--YDNSYQQYYLQYLILIQFQINNYINPISLLSS 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,533,990
Number of Sequences: 1657284
Number of extensions: 7563859
Number of successful extensions: 16419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16409
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)