Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K19
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    27   7.1  

>U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical
           protein M01E11.2 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 478 ITLRSYILISENQPYNVDLNLYLLRYYISVSFQISNIINRENLLASINIQIQKI 317
           I LR+  +  +N P NVD   Y+   + S+   + +  NR+  L    +Q+  +
Sbjct: 271 ILLRTIAVYKKNDPANVDEREYMENLFNSLCAALMHPANRKKFLDGEGLQLMNL 324


>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 228 VTNSEQSASII*TWRRIGGFKITPYDFYSRLLIHLLDVK 112
           VT+++ SA+ I T    GG+ +  YDFY  L  +++  K
Sbjct: 56  VTSAKFSATPIPTITPGGGYCVLAYDFYYNLATNMITAK 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,153
Number of Sequences: 27780
Number of extensions: 183524
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)