Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K15
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA51C Cluster: hypothetical protein TTHERM_0067...    36   0.81 
UniRef50_Q54IE8 Cluster: Putative uncharacterized protein irlE; ...    34   3.3  

>UniRef50_UPI00006CA51C Cluster: hypothetical protein
           TTHERM_00678460; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00678460 - Tetrahymena
           thermophila SB210
          Length = 1542

 Score = 35.9 bits (79), Expect = 0.81
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 347 CLHLFTRRYSIIAVT-NLHLKETASVIYLTNYTSSLFIXSDAVNILKIFYK 496
           C  L+++ YSII V  N+      S I L+NY ++ FI     +ILKI YK
Sbjct: 289 CKQLYSQEYSIIPVIFNVFTSILNSYINLSNYQNNHFIIDLTKSILKILYK 339


>UniRef50_Q54IE8 Cluster: Putative uncharacterized protein irlE; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein irlE - Dictyostelium discoideum
            AX4
          Length = 1350

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 281  CLIYFCCVEGARPAGHTAR*SRCLHLFTRRYSIIAVTNLHLKETASVIYLTNYTSS 448
            CLIYF    GA P G   + SR  ++   +Y++  ++NL+L  T  +  + +Y  S
Sbjct: 1099 CLIYFIMTNGAHPFGD--KFSRLRYITKSKYNLSQLSNLNLVATHLIELMISYDES 1152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,877,725
Number of Sequences: 1657284
Number of extensions: 7318204
Number of successful extensions: 13401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13398
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)