Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K14
         (531 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori...    40   0.036
UniRef50_A1D7G0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_A0TSJ1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  
UniRef50_A4FGY6 Cluster: Twin-arginine translocation pathway sig...    32   9.5  

>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
            Reverse transcriptase - Bombyx mori (Silk moth)
          Length = 1076

 Score = 39.9 bits (89), Expect = 0.036
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +1

Query: 250  VASWESLKAMLDFCDSTISQKEAARRRNE 336
            + S ES KAMLDFC+ TISQKEAA R  E
Sbjct: 1022 LGSDESWKAMLDFCECTISQKEAAGRVRE 1050


>UniRef50_A1D7G0 Cluster: Putative uncharacterized protein; n=1;
           Neosartorya fischeri NRRL 181|Rep: Putative
           uncharacterized protein - Neosartorya fischeri (strain
           ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 209

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 251 TVGSGGF-PLQRWLC-AAPLTQYDAGACAPRRLPHRSRR--NGGTTPSSP 114
           TVG+G   P +R +  AAP  QY+  + +P+RL  RSRR   G  TP SP
Sbjct: 121 TVGAGNSAPGRRQVYKAAPDIQYEGPSASPKRLRRRSRRPKEGQRTPLSP 170


>UniRef50_A0TSJ1 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia cenocepacia MC0-3|Rep: Putative
           uncharacterized protein - Burkholderia cenocepacia MC0-3
          Length = 599

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -2

Query: 335 SFRRRAASFCEIVESQKSSIAFKDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLP 156
           SF RR         S++          AT G    PL+R   A P  +  AG   P R P
Sbjct: 326 SFPRRPMRQSRASASRRPPPCRATGRTATAGQSRSPLRRANRARPPARRAAGTAQPARRP 385

Query: 155 HRSRRNG 135
            R+RR+G
Sbjct: 386 GRARRDG 392


>UniRef50_A4FGY6 Cluster: Twin-arginine translocation pathway
           signal; n=1; Saccharopolyspora erythraea NRRL 2338|Rep:
           Twin-arginine translocation pathway signal -
           Saccharopolyspora erythraea (strain NRRL 23338)
          Length = 494

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 335 SFRRRAASFCEIVESQKSSIAFKDSHD--ATVGSGGFPLQRW 216
           S R RA ++C+  E  ++ + F   HD  AT  SGG     W
Sbjct: 57  SIRPRAIAYCQTAEDVRTCVRFAQDHDIHATPRSGGHSFTGW 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,506,549
Number of Sequences: 1657284
Number of extensions: 6143979
Number of successful extensions: 17783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17780
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)