Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K14
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    28   1.00 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   1.3  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   9.3  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 215 LCAAPLTQYDAGACAPRRLPHRSRRNGGTTPSSP 114
           + A P+          R+ P+ ++RN  TTPSSP
Sbjct: 458 MSALPMRPRSQNVDKHRKFPYYNKRNAVTTPSSP 491


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 209 AAPLTQYDAGACAPRRLPHRSRRNGGTTPSSPLV---*TLHNQYCFFSHFSFHIGNSFLF 39
           +AP  QY   A  P++ P+   +     P  P+V    T H     F      +G++F+F
Sbjct: 222 SAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEHKHSSTFKKIGSGLGSAFVF 281

Query: 38  G 36
           G
Sbjct: 282 G 282


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 442 LQHSYIIFIYLTLNSFYNNKMMALSFLA 359
           +Q+ Y I   L  + +YNNK+ + +FLA
Sbjct: 329 IQYLYSITTMLPCSLWYNNKLYSTAFLA 356


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 265 TPTTRRSAAAGFLYNDGCALLRLRSM 188
           TP     +   +LYN+G +LLR R+M
Sbjct: 552 TPDILIHSLCVYLYNNGVSLLRTRAM 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,260
Number of Sequences: 5004
Number of extensions: 24929
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)