Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_K14
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0127 - 25845253-25845351,25845506-25845569,25845962-258461... 33 0.19
12_01_0736 + 6582371-6585370 29 2.3
12_01_0718 + 6339982-6342981 29 2.3
12_01_0722 + 6355972-6359031 28 5.4
08_02_1633 + 28392378-28393445 28 5.4
06_01_0036 + 364316-365758 28 5.4
10_03_0040 - 7307108-7307564,7307611-7307915 27 7.1
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 27 7.1
12_01_0740 + 6646471-6649407 27 9.4
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 27 9.4
>05_06_0127 -
25845253-25845351,25845506-25845569,25845962-25846109,
25846224-25846486,25847065-25847209,25847300-25847639
Length = 352
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 181 PASYCVSGAAHSHRCRGNPPLPTVASWESLKAMLDFCDSTISQKEAARRRNERVRDLPSR 360
P+ C S AAHS +G +P V W +++ + S K++ R+N+ D
Sbjct: 146 PSPPC-SAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKP 204
Query: 361 QEKKEP 378
KK P
Sbjct: 205 ICKKRP 210
>12_01_0736 + 6582371-6585370
Length = 999
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 269 KDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLPHRSRRN 138
+ SH +T + F LC APL++ + P +PH S+++
Sbjct: 921 QSSHFSTFSNASFEGNIGLCGAPLSKQCSYRSEPNIMPHASKKD 964
>12_01_0718 + 6339982-6342981
Length = 999
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 269 KDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLPHRSRRN 138
+ SH +T + F LC APL++ + P +PH S+++
Sbjct: 921 QSSHFSTFSNASFEGNIGLCGAPLSKQCSYRSEPNIMPHASKKD 964
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 269 KDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLPHRSRRN 138
+ SH +T + F LC PL++ + P +PH S+++
Sbjct: 941 QSSHFSTFSNASFEGNIGLCGPPLSKQCSDRSEPNIMPHASKKD 984
>08_02_1633 + 28392378-28393445
Length = 355
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 211 HSHRCRGNPPLPTVASWES 267
H H C +PPL T SW++
Sbjct: 257 HDHDCPNHPPLTTPRSWDA 275
>06_01_0036 + 364316-365758
Length = 480
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 232 NPPLPTVASWESLKAMLDFCDSTISQKEAARRRNERVRDLPS 357
+PP P V +LD DST S +E R N R+ LPS
Sbjct: 121 HPPQPLVDDLLDAARLLDAGDST-SAREILARLNHRLPSLPS 161
>10_03_0040 - 7307108-7307564,7307611-7307915
Length = 253
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 182 GACAPRRLPHRSRRNGGTTPSS 117
GA A RR P ++RRN G PS+
Sbjct: 44 GAGAARRRPGKARRNSGDPPSA 65
>06_02_0107 - 11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 238 PLPTVASWESLKAMLDFCDSTISQKEA-ARRRNERVRDLPSRQEKKEPSF---CYY 393
PLP + + E LK + CD+ Q A ARR +++ D + +EK S C+Y
Sbjct: 1212 PLPGIGNVEKLKELDLDCDNVPKQFSACARRGQKQMTDQVNPEEKHSVSSISKCHY 1267
>12_01_0740 + 6646471-6649407
Length = 978
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 269 KDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLPHRSRRN 138
+ SH +T + F LC PL++ + P +PH S+++
Sbjct: 900 QSSHFSTFSNASFEGNIGLCGPPLSKQCSYRSEPNIMPHASKKD 943
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 196 VSGAAHSHRCRGNPPLPTVASWESLKAMLDFCDSTISQKEAARRRNERVRDLPSRQEKKE 375
VS A + R PP P + E ++ D C K + ER +D+P + E K+
Sbjct: 134 VSPFAPAPRRPQYPPFPEDGNVEDVRKWNDECHEV--SKIIKKIEKERDKDIPIKTEPKD 191
Query: 376 P 378
P
Sbjct: 192 P 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,730
Number of Sequences: 37544
Number of extensions: 190301
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -