Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K13
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   147   1e-36
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    27   2.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   4.2  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  147 bits (357), Expect = 1e-36
 Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 2/218 (0%)
 Frame = +2

Query: 170 LAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKA-NGISKVLVAESDV 346
           L EH    LSPA+ + + AAK+ GGDV   V G      ++ +AK+ N + KV+  E+  
Sbjct: 33  LLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVIYVENPS 92

Query: 347 FKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANT 526
           ++    + +  ++    K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+  A+T
Sbjct: 93  YEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVVSADT 152

Query: 527 FVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQ 706
           FVR  YAGN  +T+  KDPIK++TVR +AF A P  G  AA            L E++ +
Sbjct: 153 FVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAALQEWVSE 212

Query: 707 ELTKSDRPXLTXAKNIVSGGRGLKSGDNF-KLLYDLXD 817
            + K+ RP L+ A+ +V+GGR LK  + F ++L  L D
Sbjct: 213 NIIKNARPDLSSAERVVAGGRPLKDKETFERILTPLAD 250


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 152 CKVL*VLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTK 274
           CK+L V   H N  L   T+N L   + +  DV V     K
Sbjct: 42  CKILGVSTVHGNTTLEFTTKNALAVMELLNQDVDVHAGAAK 82


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 759 DTIFLAXVSXGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNA 610
           DT+ L   + GLS    S   NST+    SPS     +AD  S+G +  A
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 734 LTXAKNIVSGGRGLKSGDNFKLLYDL 811
           LT    I+S  RG KSGDNF  L++L
Sbjct: 148 LTQMAKIISTRRG-KSGDNFVYLFEL 172


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 296 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 180
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = -3

Query: 693  STRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNIALPA*IVLTKVLAS 514
            +T S   S + ++++A+   S+ S+      T  +      + +  +L + I    V  S
Sbjct: 1031 ATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGS 1090

Query: 513  LIPMISVIGDTSSLAATRGSTVFPKAVA 430
                ++ +  TSS+  T  ST+   A A
Sbjct: 1091 PTSSVTAVSSTSSVEGTASSTIAAAASA 1118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,150
Number of Sequences: 5004
Number of extensions: 63621
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)