Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_K13
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 141 7e-34
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.007
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 4.4
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 4.4
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 4.4
03_02_0233 - 6622345-6622538,6623526-6624120 29 5.9
03_01_0056 - 471338-471919,472013-472213 29 5.9
01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857 29 5.9
02_05_1275 - 35395228-35395642,35396682-35397250 28 7.8
01_06_1098 + 34518608-34519546 28 7.8
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 141 bits (341), Expect = 7e-34
Identities = 88/230 (38%), Positives = 138/230 (60%), Gaps = 13/230 (5%)
Frame = +2
Query: 167 VLAEHNNEVLSPATQNTLNAAKKIGGD---VSVLVAGTKCG--PAAESIAKANG-ISKVL 328
V+AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A ++ +S+VL
Sbjct: 35 VVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASSHPLVSEVL 94
Query: 329 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 508
VA+SDVF AE L+ + Q + ++H++A +T+FGK +LPR AA LDVSP+TD+
Sbjct: 95 VADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDVSPVTDVTS 154
Query: 509 IKDANTFVRTIYAGNAILTLE--AKDPIKVITVRGTAF-PAEPLEGGSAA----IDKAPE 667
I + FVR IYAGNA+ T+ +DP ++++R T+F P E + A +D +
Sbjct: 155 ISEPRVFVRPIYAGNALCTVRYTGEDPC-MMSIRSTSFSPTEAMSEAKVAPITQVDLSFL 213
Query: 668 GDYKTDLVEFLKQELTKSDRPXLTXAKNIVSGGRGLKSGDNFKLLYDLXD 817
+ + ++ + ++RP L A +V+GGRGLKS +NFK+L L +
Sbjct: 214 SEGSSGKSAWVNLKSQDTERPDLANAPVVVTGGRGLKSAENFKVLEQLAE 263
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 173 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 295
+ +NN +L PA N ++ A+K+ GD+S++V G G A S
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 194 LSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 295
L P T LNAA + G + G+ C P A S
Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 278 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 189
H+WF P A HH W L++ VP
Sbjct: 164 HLWFDPTAGFHHYAILWNPDQILFLVDDVP 193
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 173 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 295
+ +NN +L A + ++ A++ GD++V+V G G A S
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 395 QKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGN 553
+K + F A A A G + LPR A +SP + ++ + A +FV + +G+
Sbjct: 67 EKDWSFLDAAAAAAAAGGS-LPRALAAGALSPASRVLAVTPAPSFVDALLSGH 118
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 278 HIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCCARRAPK 162
H+WF P A HH W L++ VP RR P+
Sbjct: 118 HLWFDPTADFHHYAILWNPDHIVFLVDDVP---VRRYPR 153
>01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857
Length = 92
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 547 SINCSHKGISILDTNDISYW*HIKLGRNS 461
++ C + I++ +D YW HIK+ R++
Sbjct: 23 AVGCRRRSHHIIECDDAEYWHHIKIERST 51
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 278 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 189
H+WF P A HH W L++ VP
Sbjct: 168 HLWFDPTADFHHYAILWTSDHIIFLVDDVP 197
>01_06_1098 + 34518608-34519546
Length = 312
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 777 FKPRPPDTIFLAXVSXGLSDLV-NSCFKNSTRSVL*SPSGALSIAADPPSNGSAG 616
FKPR PD L+ GL ++ N+ + V SP ++ AD P NG G
Sbjct: 137 FKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNP-NGKIG 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,591,361
Number of Sequences: 37544
Number of extensions: 414951
Number of successful extensions: 1226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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