Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K12
         (812 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K7J3 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_A6Q1Q0 Cluster: NADH-quinone oxidoreductase, chain G; n...    33   6.5  
UniRef50_A0BMN1 Cluster: Chromosome undetermined scaffold_117, w...    33   8.6  

>UniRef50_A5K7J3 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1075

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 79   FYLFNYEYCCTGYISFDCLNRQKESIIY 162
            FY+FNY+Y   G +S   +N+Q+ SI+Y
Sbjct: 1013 FYIFNYDYPSEGQLSAQVVNKQESSILY 1040


>UniRef50_A6Q1Q0 Cluster: NADH-quinone oxidoreductase, chain G; n=3;
           Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
           chain G - Nitratiruptor sp. (strain SB155-2)
          Length = 827

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 271 DEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQ 450
           DE   +     FK +  ++     TN E  +L+ +KE+     + +  K Y +F +N SQ
Sbjct: 299 DEKAFEKALKAFKKADTIRFTSYITNEEALILQKLKEKFGYKLINEDAKQYKQFLDNFSQ 358

Query: 451 Y 453
           Y
Sbjct: 359 Y 359


>UniRef50_A0BMN1 Cluster: Chromosome undetermined scaffold_117,
           whole genome shotgun sequence; n=6; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_117,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 218

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 549 FQNHWHHGYMNVNFVNQSFLKSFFRT 472
           F+N  H GY  VNF+NQ  +  F+RT
Sbjct: 162 FKNEGHLGYAFVNFINQDVVLKFYRT 187


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,806,406
Number of Sequences: 1657284
Number of extensions: 12718179
Number of successful extensions: 27150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27137
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)