Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K12
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.4  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.4  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   9.7  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   9.7  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.7  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 307 KISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 438
           ++  D  +K++    +   LK++ E+K +  +++CN+    F E
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
           LS  ++  VGT     +G+I+K G+ + +L+    +VF
Sbjct: 491 LSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVF 528


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 570 IYYTRNSFQNHWHHGYMNVNFVNQSFLKSFFRTSTDLMH 454
           +YY  ++F N  H  Y N N   +SF   ++R S+ L H
Sbjct: 322 LYYISSAFSNLLHCRYFNCNDRLRSF---YYRFSSWLFH 357


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 356 SSPFVGTSFNCTSGLILKHGDTISKLSSSSF 264
           SSPF+  +F+CT    +   + + K +SSSF
Sbjct: 37  SSPFM--AFSCTQKPSVSENENVGKYASSSF 65


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 428 SLPKISLNMCMRSVEVLKNDFKND 499
           S PK+   M +RS + L+ND K+D
Sbjct: 411 STPKLIKRMSLRSKKSLRNDSKSD 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,566
Number of Sequences: 5004
Number of extensions: 61518
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)