Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_K12
         (812 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    26   1.2  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.8  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.8  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 268 DDEDNLDIVSPCFKISPDVQLKEVPTNGEEY 360
           DD+   D+++  F++ PDV+ K V   G+EY
Sbjct: 367 DDQTPTDVLTDVFQVPPDVE-KYVGFCGKEY 396


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 79  ILGQYFSIISFL*SESAVLLVI 14
           +LG YF+ I F+ + S VL V+
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVV 314


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 79  ILGQYFSIISFL*SESAVLLVI 14
           +LG YF+ I F+ + S VL V+
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVV 314


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,576
Number of Sequences: 2352
Number of extensions: 14909
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)