Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_K09
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44) 132 5e-31
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 33 0.23
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 33 0.23
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 33 0.23
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_11999| Best HMM Match : B5 (HMM E-Value=7) 33 0.30
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 29 4.9
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0) 29 4.9
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
Length = 303
Score = 132 bits (318), Expect = 5e-31
Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Frame = +1
Query: 358 FQDAWKGIIDNLTTNKKFT-QLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPEN 534
F DA+ G +++L ++ + + W+++VLEYNV GGK+ RG++ + + + E+
Sbjct: 21 FDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLIREEH 80
Query: 535 VTEEMVRLARVAGWCTEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVY 714
T+E +R+A + GWC E QA+ ++ DDIMD S TRRG PCWYR P+VG AIND I++
Sbjct: 81 FTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVGNIAINDGIMIE 140
Query: 715 GSIYEILKIYFGKAKEYADILDIFNEA 795
+++ +LK + Y D++++F+EA
Sbjct: 141 QTVFRLLKKHIKHQSYYVDVVELFHEA 167
>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 34.3 bits (75), Expect = 0.13
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 391 LTTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVA 570
+T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 29 ITKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQ 85
Query: 571 GWCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 86 EGITDMIAKLSVIINNDNVPSVNT 109
>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1400
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 86
Query: 574 WCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 87 GITDMIAKLSVIINNDNVPSVNT 109
>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 636
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 414 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 470
Query: 574 WCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 471 GITDMIAKLSVIINNDNVPSVNT 493
>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1378
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 9 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 65
Query: 574 WCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 66 GITDMIAKLSVIINNDNVPSVNT 88
>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 86
Query: 574 WCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 87 GITDMIAKLSVIINNDNVPSVNT 109
>SB_11999| Best HMM Match : B5 (HMM E-Value=7)
Length = 103
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTHQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEELMETEEIQE 86
Query: 574 WCTEML-QAYLIMNDD 618
T+M+ + +I+N+D
Sbjct: 87 GITDMIAKLSVIINND 102
>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1816
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 394 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 573
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 363 TKDGGFTKL-ELASAKNTTHQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 419
Query: 574 WCTEML-QAYLIMNDDIMDGSST 639
T+M+ + +I+N+D + +T
Sbjct: 420 GITDMIAKLSVIINNDNVPSVNT 442
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -2
Query: 503 STVVMPLIFLPPLTLYSKTFLTQLPSSGSCVNFLFVVRLS 384
ST + ++L P++ FL +LP S SC++FL+ + +S
Sbjct: 705 STSCIDFLYLLPVSTSCIDFLYRLPVSTSCIDFLYRLPVS 744
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 503 STVVMPLIFLPPLTLYSKTFLTQLPSSGSCVNFLFVVRLS 384
ST + ++L P++ FL LP S SC++FL+ + +S
Sbjct: 692 STSCIDFLYLLPVSTSCIDFLYLLPVSTSCIDFLYRLPVS 731
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 581 VHQPATRANLTISSVTFSGFSNNS*ASTVVMPLIFLPP 468
V QP+ ++T S+VT G S S S+V P F PP
Sbjct: 928 VTQPSVTNHVTQSNVTRKGESKKSPKSSVTPPKSFTPP 965
>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 483
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 370 WKGIIDNLTTNKKFTQLPELGSWVKKVLEYN 462
W+ + NLT F L E G W K +L N
Sbjct: 33 WQFVSGNLTDTPNFDYLAETGVWAKNMLTVN 63
>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 717 TVDEYGVVDGAEAHVGHAVPARDPAPGRR 631
T +Y + GA+ +VG A+ AR P RR
Sbjct: 366 TATDYSLTGGAKLYVGDAMEARSPTARRR 394
>SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 720 YIRNTQDIFRES*RIRRHPGHFQRGSSLYEHGTTFRLRHGAPQQT 854
+I D R +I RH H ++ E T+ RLR G P QT
Sbjct: 284 FIVVAHDALRVYHQIARHQPHSWSNKTVQESQTSSRLRTGTPLQT 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,738,091
Number of Sequences: 59808
Number of extensions: 507204
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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