Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_K03
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 29 0.61
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 29 0.81
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 27 3.3
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 4.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 4.3
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 5.7
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 26 5.7
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 26 5.7
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 5.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.6
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 7.6
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 7.6
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 26 7.6
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 415 NISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEK 564
+ ST+P I E IN S A+ K P S PDA+ S I K
Sbjct: 302 SFQSTSPLGLEIVETEINGSSTTADSKNSHSPYSKFSSAYPDAENSNISK 351
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 175 WSLFRHVHFEYRSQKQQRPFSFHDMYTQ 92
W++ H E QK + PF HD YT+
Sbjct: 277 WTIEPHAFVEQYPQKLRMPFLLHDSYTE 304
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 193 CSLTLQPCRNPVV-TKEGYLFDKEAILEYI 279
C LTLQP +P++ T + ++K+AIL +
Sbjct: 179 CPLTLQPIVHPILSTACNHFYEKDAILSLL 208
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 689 RFSLAIKDFLSSGSFTNVHLTSIKSFIFNGLP 594
+FS+ +K +L+ G F++V+L + +F G P
Sbjct: 30 KFSVTVKRYLAEGGFSHVYLVQL---VFPGKP 58
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = -3
Query: 749 LITAQGTALLNISCVTGHMYRFSLAIKDFLSSGSFTNVHLTSIKSFIFNGLPLIGQ*TVG 570
LI++QG ++ + + ++ + +KD++ S TN T IK PL + +
Sbjct: 825 LISSQGLKRVDCASIRRENFKPDITLKDYVDSFKPTN---TVIK-------PLGDRDIMP 874
Query: 569 SGFSIFEIFASGSWDGTQK--LGNCFSLPFAIFDTEF 465
G +FE+ A+ S + ++K L F++P ++D F
Sbjct: 875 DGQQLFELMATYSVEISEKTELKADFAVPHNMYDNGF 911
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 785 STHSIVTTCPEVLITAQGTALLNISCVTGHMYRFSLAIKDFLSSGSFTNVHLTSIKS 615
S S ++TCP + A AL + T +++ L + DF G+F ++ S++S
Sbjct: 37 SDDSSISTCPMMFFDAAIEALSTCNTATLIIHQPGLEVNDF-QLGAFKHLKRVSLQS 92
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 691 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKK 801
++CP+T ++S+ A I GHV +++ +K
Sbjct: 103 WLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEK 139
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 195 AAIKVFYGVFSDTFTLSTVARSSSVLFLF 109
A+IK G+F T T VA S ++L+LF
Sbjct: 334 ASIKAARGIFYSTVTSFIVAFSLAILYLF 362
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +1
Query: 391 IKFMNREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSF 516
++F N+E+NI TP+++ + + ++V++I+ K + S+
Sbjct: 46 LRFANKEENICRLTPNSAFVPVRD-SAVASISTSKVQDFNSY 86
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 391 IKFMNR--EKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLP 537
I+ MN E N ST P+ SAI +T ++V+ I +G E VP+ +P
Sbjct: 848 IRVMNHVNELNGVSTKPA-SAITPETKSTVNQIMSGGEALAAPVAVPAPIP 897
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 284 LMMYSKIASLSNK*PSFVTTGFLQGCNVRLQQSKFFMESFP 162
L +YS I+ L+N P +TG + N +++ + F +S P
Sbjct: 42 LPLYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKDSHP 82
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 548 IFASGSWDGTQKLGNCFSLPFAIFDTEFIVFSSIAEVLGVVDEIFFSL 405
+FASGSWDG +L + + + E + ++ V G ++ + SL
Sbjct: 425 LFASGSWDGNIRL---WKIAEGLRSFEPLTIATPLSVYGCINSLSLSL 469
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 184 FDCCSLTLQPCRNPVV----TKEGYLFDKEAILEYI 279
F+ CSL+LQP +P TK+ +FD I+ ++
Sbjct: 42 FNYCSLSLQPFNHPCCLVDETKQAIIFDFRFIVPWL 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,200
Number of Sequences: 5004
Number of extensions: 68926
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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